PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897601.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family G2-like
Protein Properties Length: 397aa    MW: 44686.9 Da    PI: 9.1564
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94e-3270123255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH rFv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  XP_015897601.1  70 PRLRWTPDLHLRFVHAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 123
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.79166126IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2966124IPR009057Homeodomain-like
SuperFamilySSF466898.6E-1569125IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2270125IPR006447Myb domain, plants
PfamPF002491.6E-971122IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEASLSSGRS ECLKTSPSNQ NDDQGGISES GENDDESNKP QNGGSSSNST IDESEKRGSS  60
VRPYVRSKLP RLRWTPDLHL RFVHAVERLG GQERATPKLV LQLMNIKGLS IAHVKSHLQM  120
YRSKKTDDPS QVIADHRHLV ECGDRNIYNF SQLPMLQGYN YNQTHSSSFR YGYHDNASPW  180
NAYNGNLKHS RSSSSSSSPF YGTDKIFGGN TTTSNWASTF HFPTGISSFS TTHDQQSSSW  240
KIHKPKDEML IQPYQNRESW THYNNLQPKA VQELTGLNKN NNNNNNNNNN NALPDSNTRT  300
SIQDWKMPKR KASDNCNLDL DLSLRITSRN EMDQNHQKSS TLLGEDEVDS NLSLSLYSSS  360
TSLSLKSAKL SRLKVEGTED RKDQHARKRA STLDLTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-1871125458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-1871125458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-1871125357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1871125357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1871125357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1871125357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-1871125458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-1871125458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-1871125458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-1871125458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-1871125458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-1871125458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897601.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897601.10.0myb-like protein H
TrEMBLA0A2N9FI591e-103A0A2N9FI59_FAGSY; Uncharacterized protein
STRINGXP_010092813.11e-103(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.17e-64G2-like family protein