PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015897844.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 319aa MW: 36997.2 Da PI: 8.1871

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015897844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.3	2.2e-22	59	144	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA++vGF +r+sk +k ++g++++rtf+C++eg+re +k++ + +++++etr gC a++k++++++gk+++t++ +H+H XP_015897844.1 59 NFYDAYAYKVGFGIRRSKGHKD-QSGKMKNRTFCCYCEGFREIDKRN-INVKSHHVETRFGCLARMKINLDQTGKYRITDFIAQHTHV 144 6**************99998.7788*************999.899999*******************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-18	59	144	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MNNDSYVDKD INMSLEDEDK KDEGNINGQE KIEAIHSKIL DEMIPKVGIE FKSEDEAYNF 60 YDAYAYKVGF GIRRSKGHKD QSGKMKNRTF CCYCEGFREI DKRNINVKSH HVETRFGCLA 120 RMKINLDQTG KYRITDFIAQ HTHVTSTPSK SHLHRSQRKL TFVQTVEIDI ADSSRIAPKA 180 SLELMAKRVG GYENLGFIRD DYKNYLKTKR TIQMKVGETD GVLEYLQFMQ LEDPYFFYAI 240 QVNQDDLISN IFRADAKMMI AYSDFGDVVS FDTTYRKNQS GRPFAMFLGV NTISKLLYLE 300 LHYYTMKVLK HLSGCLILL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015897844.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015897844.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A151RKW8	1e-118	A0A151RKW8_CAJCA; Protein FAR1-RELATED SEQUENCE 5
STRING	XP_008246048.1	1e-109	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-47	FAR1-related sequence 5