PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015897941.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 201aa MW: 22809.7 Da PI: 9.6801

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015897941.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C+k F+++ L H++ H XP_015897941.1 63 YNCKHCNKKFPNSQALGGHQNAH 85 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.67E-7	60	90	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-4	61	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.071	63	90	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.7E-6	63	87	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MINPTQSQKR PMDELSESNQ WLDLKLSNGN ETNLNVNLEL QLSLMTNKNS KIKMMKKMKT 60 RGYNCKHCNK KFPNSQALGG HQNAHKRERA ILKMEKEWND LKEAAAAFGF GYNNNINNTS 120 SIFSDIQHDY LYRSAYPYPH HHPTMISTCT SMHMAALVAS ASPRTIPSYD INGQVSLQYP 180 QHSTPSASTN TNHSHHVHLA L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015897941.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015897941.1	1e-150	zinc finger protein 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14229	12	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	3e-10	C2H2 family protein