PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897975.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family G2-like
Protein Properties Length: 301aa    MW: 32148.8 Da    PI: 7.0309
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897975.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-3078131155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  XP_015897975.1  78 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 131
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05975134IPR017930Myb domain
SuperFamilySSF466892.87E-2075135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-3077136IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-2479131IPR006447Myb domain, plants
PfamPF002491.1E-781130IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MREDESNWFS RWEEDLPSPE ELMPLSQTLI TPDLALAFDI RNSPLIPPPP PPXPPDFADS  60
ADLGSGAAGE EPARTLKRPR LVWTPQLHKR FVDAVAHLGI KNAVPKTIMQ LMSVDGLTRE  120
NVASHLQKYR LYLKRMQGLS GGSAAGAAGA GAAAAALAAS ADPATDHLFA SSPVPPHFLH  180
PGRPNSDHFL PFVPVAALQH HHHHHHHHQQ QMAAAAAAAA HSPLQPQPYH RQVGHFGSPT  240
NGQFEHSFLA RQSQPVHRMG SAAVHNPVPG YVEDLESANA AAGGGGGGGR KVLTLFPTGD  300
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-3278134157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897975.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897975.20.0LOW QUALITY PROTEIN: transcription factor MYBC1
SwissprotO222105e-62MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A059A3P31e-132A0A059A3P3_EUCGR; Uncharacterized protein
TrEMBLA0A2P5D2N81e-132A0A2P5D2N8_PARAD; Octamer-binding transcription factor
STRINGXP_010036386.11e-133(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-85G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]