PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898010.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 257aa    MW: 28597.4 Da    PI: 7.4438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-1482128354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+ve +++L
  XP_015898010.1  82 KNHKEAEKRRRERINSHLDKLRTLLPCN-----SKTDKATLLGKVVERVREL 128
                     58*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.55579128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1182128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.99E-1282131No hitNo description
SuperFamilySSF474593.53E-1583151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1483147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1285134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.2E-5167219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MQAGGENPEQ LYRLLAQNGL IEMGAYGGGG TAGISCCINN SSSETLSGMQ SFCSSNSCYY  60
PLELDTTPPP PLPHDRALAA LKNHKEAEKR RRERINSHLD KLRTLLPCNS KTDKATLLGK  120
VVERVRELKE ETSEISREVE SLPSESDEIS VVDYSTSSDG RLIFKASLCC EDRSDLIPDL  180
IEILKSLHLK TLKSEMATLG GRFRNVLIVA ADKPDHHSIE SLHFLQNAFK SLLERSNSSS  240
ERSKRRRCLD RKLFSST
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898010.10.0transcription factor bHLH106-like
SwissprotO806749e-77BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A251N6531e-108A0A251N653_PRUPE; Uncharacterized protein
STRINGXP_008240669.11e-109(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]