PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898083.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 232aa    MW: 26338.9 Da    PI: 7.8589
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898083.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1101.8e-34211112101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed+ ++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF +++F+kg+k++l++
  XP_015898083.1  21 FLLKTYMLVEDPVTDDVISWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDKFRKGEKDQLCE 106
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_015898083.1 107 IRRRK 111
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.2E-3614105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-5017110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-3217110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.8E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEGVCEKGLL EYMRKSTPPP FLLKTYMLVE DPVTDDVISW NADGTAFVVW QPAEFARDLL  60
PTLFKHSNFS SFVRQLNTYG FRKVATSRWE FCNDKFRKGE KDQLCEIRRR KAWVNKQQSV  120
ALTGQAEAAA VQDQSDEDQR SSSTSSSSGY SSLVDENKRL KQENGVLNTE LSTMKRKCKE  180
LLDLVAKCAH MEKEGHEGPK LFGVTLEVQG EMEKKRKRVE ISESASILLS QA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B4e-21211104104Putative transcription factor
5d5x_B4e-21211104104Putative transcription factor
5d5x_E4e-21211104104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898083.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898083.11e-174heat stress transcription factor B-3-like
SwissprotO222304e-70HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A251NAD01e-123A0A251NAD0_PRUPE; Uncharacterized protein
STRINGXP_008244246.11e-126(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.15e-61heat shock transcription factor B3