PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898290.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 928aa    MW: 103363 Da    PI: 5.3132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898290.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-174994248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+WT+eEde+l  av+ + g++Wk+Ia+ +   Rt+ qc +rwqk+l
   XP_015898290.1 49 GKWTAEEDERLRIAVHHFKGKNWKKIAEFFK-DRTDVQCLHRWQKVL 94
                     89****************************9.************986 PP
2Myb_DNA-binding55.41.4e-17100146148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde +v +v+++G + W+ Ia+ ++ gR +kqc++rw+++l
   XP_015898290.1 100 KGPWSKEEDEVIVALVNKYGAKKWSIIAEALP-GRIGKQCRERWHNHL 146
                      79******************************.*************97 PP
3Myb_DNA-binding48.61.8e-15152194145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
   XP_015898290.1 152 KEPWTQEEELTLIRAHQTYGNK-WAELTKFLP-GRTDNAIKNHWN 194
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5994394IPR017930Myb domain
SMARTSM007175.9E-134796IPR001005SANT/Myb domain
PfamPF002496.3E-154894IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-1549104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-2149106IPR009057Homeodomain-like
CDDcd001671.55E-125094No hitNo description
PROSITE profilePS5129431.15895150IPR017930Myb domain
SuperFamilySSF466898.99E-3297193IPR009057Homeodomain-like
SMARTSM007172.7E-1799148IPR001005SANT/Myb domain
CDDcd001676.68E-15102146No hitNo description
PfamPF139211.0E-16103161No hitNo description
Gene3DG3DSA:1.10.10.601.3E-26107153IPR009057Homeodomain-like
SMARTSM007175.5E-15151199IPR001005SANT/Myb domain
PROSITE profilePS5129419.049151201IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-22154201IPR009057Homeodomain-like
CDDcd001671.61E-11154194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MVGTKLMTRL RRSNIKRPGV VAAAPNTETN ACQKMRPFHG GPTRRSTTGK WTAEEDERLR  60
IAVHHFKGKN WKKIAEFFKD RTDVQCLHRW QKVLNPELIK GPWSKEEDEV IVALVNKYGA  120
KKWSIIAEAL PGRIGKQCRE RWHNHLNPAI NKEPWTQEEE LTLIRAHQTY GNKWAELTKF  180
LPGRTDNAIK NHWNSSVKKK VDTYLASGLL AQFQGLPEVR NQNSSSMGMR QGHADELIEE  240
NIIECSQRSN AVNCTKFDHV TENTAINATE DFRTEESDSG VGCNLEQHSA YEDVSPAIDD  300
TQFSSHELSG LRFLDSLEES SVQFGTSGFF PTENENYDSG SSLLQTSEGY RTSTTTEDML  360
VDSVKMEHLM ISESNCCKII FSEAMKPEGN AAKKPIYMPL NGGKSSLPGQ SDIHSSSSAR  420
TLPLKSPVRP KNVSGHTLEL EVIPNLKDDF IYVDSPNGDS DKTGHHLKNG PKLVPVDIFS  480
SSNPDSRATI LSGCSDKRDS ELNEANVPLN LAVADNTDSM QTLTLTDDSS TMQNKEKDLG  540
TLSYEPLRFP LLDIPFLNCD LMKTGSEMQQ TYSPLGIRQF MLSSTNFSSP CSLLDSPIVD  600
GTPEAILKHA AKRFSSTASI MKKQSDEILS PAEKTKGEMK FENDTNKLSY GDSMQDVVNM  660
DCSFEGGKET VENLDGRISD KDDEAKHTGV LTEHNIGKDA HETNSTLINA VLSPRSQHRK  720
LERSDLGGSL DSVSENDERQ TVPVTSLECA ESSNPSKSTL ETAENDADNQ SINMFGETPG  780
IKRDIKSPST WKSPVFVNTF LHGNVDTIMT FEDIEYFLSP GTRSYDAIGL MKQMTEQTAA  840
TITNAREVFA GDFVESAPKT IFSLDQNSTD KNNYIHHNEQ ENMPPNLLKE WRVLDFSECV  900
TPTKEMESKR LAVAPTISSP SYLMKSCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-67492018159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-67492018159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296021e-159KP229602.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB46) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024935332.10.0transcription factor MYB3R-1-like isoform X3
TrEMBLA0A2P5FT150.0A0A2P5FT15_TREOI; Octamer-binding transcription factor
STRINGXP_010089227.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.21e-157Homeodomain-like protein