PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898292.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 925aa    MW: 103090 Da    PI: 5.3132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-174691248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+WT+eEde+l  av+ + g++Wk+Ia+ +   Rt+ qc +rwqk+l
   XP_015898292.1 46 GKWTAEEDERLRIAVHHFKGKNWKKIAEFFK-DRTDVQCLHRWQKVL 91
                     89****************************9.************986 PP
2Myb_DNA-binding55.41.4e-1797143148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde +v +v+++G + W+ Ia+ ++ gR +kqc++rw+++l
   XP_015898292.1  97 KGPWSKEEDEVIVALVNKYGAKKWSIIAEALP-GRIGKQCRERWHNHL 143
                      79******************************.*************97 PP
3Myb_DNA-binding48.61.8e-15149191145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
   XP_015898292.1 149 KEPWTQEEELTLIRAHQTYGNK-WAELTKFLP-GRTDNAIKNHWN 191
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5994091IPR017930Myb domain
SMARTSM007175.9E-134493IPR001005SANT/Myb domain
PfamPF002496.3E-154591IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-1546101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-2146103IPR009057Homeodomain-like
CDDcd001671.63E-124791No hitNo description
PROSITE profilePS5129431.15892147IPR017930Myb domain
SuperFamilySSF466898.63E-3294190IPR009057Homeodomain-like
SMARTSM007172.7E-1796145IPR001005SANT/Myb domain
CDDcd001677.18E-1599143No hitNo description
PfamPF139211.0E-16100158No hitNo description
Gene3DG3DSA:1.10.10.601.3E-26104150IPR009057Homeodomain-like
SMARTSM007175.5E-15148196IPR001005SANT/Myb domain
PROSITE profilePS5129419.049148198IPR017930Myb domain
CDDcd001671.71E-11151191No hitNo description
Gene3DG3DSA:1.10.10.603.7E-22151198IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MTRLRRSNIK RPGVVAAAPN TETNACQKMR PFHGRISGPT RRSTTGKWTA EEDERLRIAV  60
HHFKGKNWKK IAEFFKDRTD VQCLHRWQKV LNPELIKGPW SKEEDEVIVA LVNKYGAKKW  120
SIIAEALPGR IGKQCRERWH NHLNPAINKE PWTQEEELTL IRAHQTYGNK WAELTKFLPG  180
RTDNAIKNHW NSSVKKKVDT YLASGLLAQF QGLPEVRNQN SSSMGMRQGH ADELIEENII  240
ECSQRSNAVN CTKFDHVTEN TAINATEDFR TEESDSGVGC NLEQHSAYED VSPAIDDTQF  300
SSHELSGLRF LDSLEESSVQ FGTSGFFPTE NENYDSGSSL LQTSEGYRTS TTTEDMLVDS  360
VKMEHLMISE SNCCKIIFSE AMKPEGNAAK KPIYMPLNGG KSSLPGQSDI HSSSSARTLP  420
LKSPVRPKNV SGHTLELEVI PNLKDDFIYV DSPNGDSDKT GHHLKNGPKL VPVDIFSSSN  480
PDSRATILSG CSDKRDSELN EANVPLNLAV ADNTDSMQTL TLTDDSSTMQ NKEKDLGTLS  540
YEPLRFPLLD IPFLNCDLMK TGSEMQQTYS PLGIRQFMLS STNFSSPCSL LDSPIVDGTP  600
EAILKHAAKR FSSTASIMKK QSDEILSPAE KTKGEMKFEN DTNKLSYGDS MQDVVNMDCS  660
FEGGKETVEN LDGRISDKDD EAKHTGVLTE HNIGKDAHET NSTLINAVLS PRSQHRKLER  720
SDLGGSLDSV SENDERQTVP VTSLECAESS NPSKSTLETA ENDADNQSIN MFGETPGIKR  780
DIKSPSTWKS PVFVNTFLHG NVDTIMTFED IEYFLSPGTR SYDAIGLMKQ MTEQTAATIT  840
NAREVFAGDF VESAPKTIFS LDQNSTDKNN YIHHNEQENM PPNLLKEWRV LDFSECVTPT  900
KEMESKRLAV APTISSPSYL MKSCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-67461988159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-67461988159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296021e-161KP229602.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB46) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898289.10.0transcription factor MYB3R-1-like isoform X2
TrEMBLA0A2P5FT150.0A0A2P5FT15_TREOI; Octamer-binding transcription factor
STRINGXP_010089227.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.21e-160Homeodomain-like protein