PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898395.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 387aa    MW: 42250.7 Da    PI: 7.0286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000522502881255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_015898395.1 250 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 288
                     6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.465238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-10248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.95E-6248292No hitNo description
Gene3DG3DSA:4.10.280.103.5E-7252294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MNRGVLQSSP VQQMMAAGNP NWWNINNMRP QQTTNQPSSA LLPPPNLFPQ FAPLPTSSSS  60
SSNSSSSLPV PSSWHDNQDL PESWSQLLLG GLVGEEDKSG MLSLQFLNQV RKLENWEDQM  120
LSGQGHQTPN VNVVDVKQEH SPTSYVYGNG NDQDHHHQFQ TSKPPTSAAA WSHHQIMASS  180
AASNSSPKSS CVTSFSSNML DFSNTNNHSD HVRHPPPDRS SECNSTATGG APLKKARVQA  240
SSTQSTFKVR KEKLGDRITA LHQLVSPFGK TDTASVLLEA IGYIRFLQSQ IEALSLPYLG  300
SGSGNMRQQQ SVHGERNCMF PEDPGQLLND SCMKRKGASD HQQDFNEEPR KDLRSRGLCL  360
VPVSCTLQVG SDNGADYWAP ALGGGFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898395.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898241.10.0transcription factor bHLH68-like
SwissprotQ8S3D11e-112BH068_ARATH; Transcription factor bHLH68
TrEMBLW9RNS90.0W9RNS9_9ROSA; Uncharacterized protein
STRINGXP_010100638.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-112bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]