PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015898404.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

TCP

Protein Properties

Length: 218aa MW: 23419.2 Da PI: 8.7909

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015898404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.2	1.5e-34	59	156	4	83
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec..eaessss 80 + +++ ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+ s+s++ c ++ ss+s XP_015898404.1 59 ASSSSRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSgtlpaapvstpspamaSTSASVTCrvQPISSVS 153 456788********************************************************666666555444444333333333444444444 PP TCP 81 sas 83 s++ XP_015898404.1 154 SGQ 156 444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.9E-29	62	164	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.885	63	117	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MALHKFSSSD HHNNQSHHQT ERTTTAVIPT ATTTTTTTTT TTAITEPSSK TQLSLPRKAS 60 SSSRDRHTKV NGRGRRVRMP AMCAARIFQL TRELGHRSDG ETIEWLLRHA EPSIIAATGS 120 GTLPAAPVST PSPAMASTSA SVTCRVQPIS SVSSGQCLFS VGPPQAAPSC RLDLCQPVGL 180 EYAAASNGYR HMPFTALLLQ TSTSEADERQ QEEALREH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015898404.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898404.1	1e-158	transcription factor TCP11-like
Swissprot	Q9SJK7	2e-43	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A0A0KH86	5e-73	A0A0A0KH86_CUCSA; Uncharacterized protein
STRING	XP_004156285.1	1e-74	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	3e-44	TCP family protein