PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898439.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 238aa    MW: 27832.6 Da    PI: 4.9171
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W  eEde+l   v+++G ++W+  a+  g++R++k+c++rw++yl
   XP_015898439.1 10 RGTWLDEEDERLTTFVNLMGERRWDDLAKASGLRRSGKSCRLRWLNYL 57
                     89********************************************97 PP
2Myb_DNA-binding48.22.6e-1564108248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+ + eE+ ++ ++++++G++ W++Iar+++ gRt++++k++w+++l
   XP_015898439.1  64 GNISVEEENIIHQLHERWGNK-WSKIARRLP-GRTDNEIKNYWRSHL 108
                      56789****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.242557IPR017930Myb domain
SuperFamilySSF466899.8E-268104IPR009057Homeodomain-like
SMARTSM007172.3E-12959IPR001005SANT/Myb domain
PfamPF002491.2E-121057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-191164IPR009057Homeodomain-like
CDDcd001677.11E-81257No hitNo description
PROSITE profilePS5129424.68758112IPR017930Myb domain
SMARTSM007176.7E-1562110IPR001005SANT/Myb domain
PfamPF002491.1E-1364108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2365111IPR009057Homeodomain-like
CDDcd001671.12E-1067108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQFQVEELRR GTWLDEEDER LTTFVNLMGE RRWDDLAKAS GLRRSGKSCR LRWLNYLRPN  60
LKHGNISVEE ENIIHQLHER WGNKWSKIAR RLPGRTDNEI KNYWRSHLRK KTQIQQGAGL  120
LDNTHNQLED AKEDLLLFQN ADHTSAQRSY NYENYHGWSV EDSGGTECNS IDAFEFSLAS  180
SPYATRMSDW ISDLSNDQSQ INYQDECNSI DSSFCFLDWT PDDGLIWACS AGSLWDMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-27711224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898439.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898439.11e-178transcription factor MYB27-like isoform X1
SwissprotQ9SCP15e-65MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A2N9F1X02e-88A0A2N9F1X0_FAGSY; Uncharacterized protein
STRINGXP_010098805.12e-88(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-67myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]