PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898541.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 753aa    MW: 81383.3 Da    PI: 6.539
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898541.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.53.6e-18372458186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L++a++e+ ++l+rg+l++ +Weev++ +  r +  ++s +qCk+k +nl+kryk ++++++++   s s++p+f+++e
  XP_015898541.1 372 EWSDAAIACLLDAYTEKFTQLNRGNLRGRDWEEVAATVseRCERQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GISASHWPWFKKME 458
                     5*************************************6656677899***********************99.566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.8E-7152202No hitNo description
PfamPF138375.0E-21370460No hitNo description
Gene3DG3DSA:3.40.1160.104.7E-73499746IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.562512747IPR015963Uridylate kinase, bacteria
SuperFamilySSF536338.38E-57513746IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006969.4E-23515726IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.06E-121515747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MASCDDDFSI LGDESDPNHH LPHAPTSHHL HQPYAPPHRL STTRATSVHA PPAQPVLSPT  60
SSDKVGAGEE QDDGEGYSEA AAFCRNPFEG DADQNGVVGV DSQSEKRKDH HHLEELSDGG  120
GGGASYGYKK PKPSPATGGA SSGGGGEYRK DREEWSDAAI ACLLDAYTEK FTQLNRGNLR  180
GRDWEEVAAT VSERCERQCK KRRRSSTRSN PNPNVLPLMA SCDDDFSILG DESDANHRLP  240
HAPTSHHLHQ PYAPPHRLST TRATSVHAPP AQPVLSPTSS DKVGAGEEQD DGEGYSEAAA  300
FCRNPFDGDA DQNGVVGVDS QSEKRKDHHH LEELSDGGGG GASYGYKKPK PSPATGGASS  360
GGGGEYRKDR EEWSDAAIAC LLDAYTEKFT QLNRGNLRGR DWEEVAATVS ERCERQSKSV  420
EQCKNKVDNL KKRYKLERHR MSNGGISASH WPWFKKMEQI VGNSLPMKVA SDEEKGAGSS  480
GNTTRQSKRC AMATPSSTGQ MNNMKPKSTA NHRWQRVVFK ISGAALAGTA PNNIDSKVAM  540
LIAREVAMAC RIGVEVAIVV GGRNFFCGET WVTTTGLDRS TAYQIGMMAT VMNSILLQSA  600
LEKMGVQTRV QTAFSMLEVA EPYSRQRAIR HLEKGRVVIF AGIGAGTGNP LFSTDTAAAL  660
RALEIHAEAV LKGTNVDGVY DCISQDNNFT FEHISFRELV ARGATSMDSM ALTFCEENRI  720
PVVVFNLLEP GNISKALCGD QVGTLIDQTG RIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A2e-565137466238uridylate kinase
1z9d_B2e-565137466238uridylate kinase
1z9d_C2e-565137466238uridylate kinase
3nwy_A4e-5651474650279Uridylate kinase
3nwy_B4e-5651474650279Uridylate kinase
3nwy_C4e-5651474650279Uridylate kinase
3nwy_D4e-5651474650279Uridylate kinase
3nwy_E4e-5651474650279Uridylate kinase
3nwy_F4e-5651474650279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898541.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922249.10.0uncharacterized protein LOC107432001 isoform X1
TrEMBLA0A2P5FVP30.0A0A2P5FVP3_TREOI; Aspartate/glutamate/uridylate kinase
STRINGEMJ048400.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein