PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898574.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 228aa    MW: 26547.9 Da    PI: 8.4187
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1964117356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ ++t++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k
  XP_015898574.1  64 KKKRLTSDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 117
                     56779************************************************9 PP
2HD-ZIP_I/II114.85e-3763154192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekk+rl+++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++L++ev +L++ l+
  XP_015898574.1  63 EKKKRLTSDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQELDVMSKEKQKLQEEVMKLKALLR 154
                     69**************************************************************************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-1852121IPR009057Homeodomain-like
PROSITE profilePS5007117.21659119IPR001356Homeobox domain
SMARTSM003899.4E-1762123IPR001356Homeobox domain
PfamPF000465.8E-1764117IPR001356Homeobox domain
CDDcd000861.14E-1464120No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2069118IPR009057Homeodomain-like
PRINTSPR000317.3E-59099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000317.3E-599115IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDWNSNLRHF VSRPECSFGF LYNYDYDQYP GMEVKHQLMV PETPQGLVST MEKNSNSYSC  60
SQEKKKRLTS DQLESLERSF QEEIKLDPDR KMKLSRDLGL QPRQIAVWFQ NRRARWKAKQ  120
LERLYDSLKQ ELDVMSKEKQ KLQEEVMKLK ALLREQAARK QISVGYTELS GEETVESTSV  180
AAIRSSNKSQ GMNQQQHQIA ACNNSVFNVE EYNTVVSPSY WGALPSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898574.11e-171putative homeobox-leucine zipper protein ATHB-51 isoform X1
SwissprotQ9LZR02e-58ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2P5FVQ01e-121A0A2P5FVQ0_TREOI; Octamer-binding transcription factor
STRINGXP_008241330.11e-121(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-61homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]