PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015898575.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

HD-ZIP

Protein Properties

Length: 197aa MW: 22743.8 Da PI: 9.3166

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015898575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	33	86	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k XP_015898575.1 33 KKKRLTSDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 86 56779************************************************9 PP
2	HD-ZIP_I/II	115.3	3.6e-37	32	123	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++L++ev +L++ l+ XP_015898575.1 32 EKKKRLTSDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQELDVMSKEKQKLQEEVMKLKALLR 123 69**************************************************************************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-19	21	90	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	28	88	IPR001356	Homeobox domain
SMART	SM00389	9.4E-17	31	92	IPR001356	Homeobox domain
CDD	cd00086	3.83E-14	33	89	No hit	No description
Pfam	PF00046	4.2E-17	33	86	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-20	38	87	IPR009057	Homeodomain-like
PRINTS	PR00031	5.9E-5	59	68	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	63	86	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.9E-5	68	84	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MEVKHQLMVP ETPQGLVSTM EKNSNSYSCS QEKKKRLTSD QLESLERSFQ EEIKLDPDRK 60 MKLSRDLGLQ PRQIAVWFQN RRARWKAKQL ERLYDSLKQE LDVMSKEKQK LQEEVMKLKA 120 LLREQAARKQ ISVGYTELSG EETVESTSVA AIRSSNKSQG MNQQQHQIAA CNNSVFNVEE 180 YNTVVSPSYW GALPSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	88	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015898575.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898575.1	1e-144	putative homeobox-leucine zipper protein ATHB-51 isoform X2
Swissprot	Q9LZR0	1e-56	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A251NAH2	1e-101	A0A251NAH2_PRUPE; Uncharacterized protein
TrEMBL	A0A2P6RBE0	1e-101	A0A2P6RBE0_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_008241330.1	2e-99	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	6e-59	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]