PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898596.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 490aa    MW: 55384.5 Da    PI: 6.0506
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898596.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.39.9e-24105205186
        trihelix   1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                     +Wt+ +v++Li a+ +++++ +++               +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++  
  XP_015898596.1 105 KWTDTMVRLLIMAVYYIGDEGGSEGtdltgkkkpsggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQN 199
                     7***************99999975446677788999999**********************************************5599999999 PP

        trihelix  81 yfdqle 86 
                     +++ ++
  XP_015898596.1 200 LLEMMD 205
                     988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-21103230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEANGLGGGL FSGLGSGMLG LEMPLHQQQN PPNPQNPHRV HPQMVAYAHH DADHHPQPQQ  60
SVKHGYPYAA KSKQIALSDE DEPGFGAEDS AGDGKRKVSP WQRMKWTDTM VRLLIMAVYY  120
IGDEGGSEGT DLTGKKKPSG GLLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK  180
RVNDILGKGT ACRVVENQNL LEMMDLTPKM KEEVKKLLNS KHLFFREMCA YHNSCGHGVG  240
GGASGAHQSP ELTQEQSLVP LNQQTQQQQR CFHSTDNVPV VGNMGRAETE GSKLIKAGSG  300
GEEEDDDDDD DDDDSDDDDD EDEEEVAEGC SRGQNGHGHE DEDDINNERS SRKRPRKGGL  360
SESSQIMHQL SCEVMAVLQD GTKSSWEKKQ WIEMRLIQLE EQQMSYKAQA FELEKQRFKW  420
LKFRSKKERE MERAKLENER RRLENVRMGL LLRQKELEFL DLHHGQPQQQ QQQQQQNSSN  480
KRGNGVQSPG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898596.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898596.10.0uncharacterized protein LOC107432054
TrEMBLA0A2P6RBE10.0A0A2P6RBE1_ROSCH; Putative transcription factor Trihelix family
STRINGXP_004303047.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-74sequence-specific DNA binding transcription factors