PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898712.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 560aa    MW: 61690.9 Da    PI: 4.752
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.2e-351252162102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d+ l+++isw ++g+sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F++gk++ll++
  XP_015898712.1 125 FLSKTFDLVDDPGLDHIISWGSTGESFVVWDHVEFARLILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFQRGKRHLLKN 210
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+ks
  XP_015898712.1 211 IQRRKS 216
                     ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-34120214IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-57121214IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-37122214IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-17125148IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.5E-31125214IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-17163175IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340164188IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-17176188IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MNPKDECYTN TLPTSPSAPQ SKSCSIGLSM ESQPFASESL FMDTNPGFSM GGSAAGLAGS  60
HSSSSLAFNP MEFQAFSTMM NLSPSIGGET DAAGGALVTG SDTGGGYIGV PQPLDCLQGN  120
PIPPFLSKTF DLVDDPGLDH IISWGSTGES FVVWDHVEFA RLILPRNFKH NNFSSFVRQL  180
NTYGFRKIDT DKWEFANEAF QRGKRHLLKN IQRRKSPQYQ QITSYTGPST EAGKFGLDGE  240
LEGLRKEKSM LMQEVVELQR QQQGTIHHMK MVNNRLRSAE QRQKQMVSFL AKLIQSPSFV  300
ARLKQKTEQG EISSSRVPRK FVKQHQYELG KSDSSMEEQM VKYYSADRNL FTSSGGPDFN  360
PLHTEQSPDY HSQGMSGKLS IDEESMQFQF DKAASDELIV SDELAVLQGL GKKTVQAEGA  420
SNMQIQDPAF KGKSVLSPQQ VVNPEYYVSF PEDLVKEKSF PELSSPGFES MIKQEDIWSM  480
GFAANAGMSS CGNELWGNPV SFDEPELGVT EGLLDVWDLG SLQAAGGSVI DKWPADESPF  540
NESENQAGQL KDSIPKNMDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2412221426129Heat shock factor protein 1
5d5v_B7e-2412221426129Heat shock factor protein 1
5d5v_D7e-2412221426129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898712.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898712.10.0heat stress transcription factor A-3
RefseqXP_024922346.10.0heat stress transcription factor A-3
TrEMBLA0A2P5BVZ00.0A0A2P5BVZ0_TREOI; Heat shock transcription factor
STRINGXP_008241431.10.0(Prunus mume)
STRINGEMJ040670.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-103heat shock transcription factor A3