PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898907.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 119aa    MW: 14112.9 Da    PI: 8.8919
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-193488256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_015898907.1 34 RKKLRLSKEQSAFLEESFKEHSTLNPKQKDALAKQLNLRPRQVEVWFQNRRARTK 88
                    788899***********************************************98 PP
2HD-ZIP_I/II121.44.7e-3934112179
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 
                     +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een +
  XP_015898907.1  34 RKKLRLSKEQSAFLEESFKEHSTLNPKQKDALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENIK 112
                     69*************************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.3133090IPR001356Homeobox domain
SuperFamilySSF466892.78E-193199IPR009057Homeodomain-like
SMARTSM003892.1E-163294IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-183488IPR009057Homeodomain-like
CDDcd000861.04E-133491No hitNo description
PfamPF000461.6E-163488IPR001356Homeobox domain
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
SMARTSM003408.3E-490118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MDFGVRRSKR DMEAIETERT SSRVSDDEEN GSTRKKLRLS KEQSAFLEES FKEHSTLNPK  60
QKDALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLTEEN IKFLVLENS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13238TRKKLRL
28290RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898907.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898907.15e-82homeobox-leucine zipper protein HAT14-like
SwissprotP466654e-56HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2P6RDF02e-64A0A2P6RDF0_ROSCH; Putative transcription factor HD-ZIP family
STRINGXP_004303339.12e-65(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-58homeobox from Arabidopsis thaliana