PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015898915.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 207aa MW: 22602.4 Da PI: 7.8917

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015898915.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF+++ L H++ H XP_015898915.1 42 YVCSSCSKSFPSSQALGGHQNAH 64 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.01E-6	39	68	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.1E-5	41	65	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	6.9E-9	42	66	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.926	42	69	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MLGKAADRSS SMPYPGGRSA ASSSTSSPSL LSAWLSISSG PYVCSSCSKS FPSSQALGGH 60 QNAHRRQREE IRVRYLRERL ERVRATTNNG IFPPSFPPPK VLPLGPESDC KIQALTVSIG 120 GEDRTERRVE LDFWHGHGSE DVDGYGEVYE LPPRENRHKC VPCLNLIRNL KESMPSLELT 180 LAIGNGYGSG MEGSESVGDK LDLTLRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015898915.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898915.1	1e-150	transcriptional regulator TAC1-like