PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899049.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 411aa    MW: 44816.4 Da    PI: 7.8877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.1e-13339384655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  XP_015899049.1 339 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 384
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-16336397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-12337386No hitNo description
Gene3DG3DSA:4.10.280.101.8E-14338394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-10339384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDSNTHQSFH HQQQQDHQSN SGLLRFRSAP SSLLINFTEE GGGDCGGGVN KNGSCEGSES  60
ERLFTRFVNY SGNNDSDSTP SFQDFDDKST VTATEAAVVS NRMNSQQQGY NTGLPPHYPR  120
HGSNTSASAM DNSSFGLVGS MAMDHQAQSK TVHSNLARQN STPAGLFSHI SVPNGFATIK  180
CAGNYGGLNG SNGEVSPPTN RLKSHLSFSS RFPTSLGMLS QISEIGSENL GAGGLEEGKL  240
GSSNGDGRFY GTGFPLGSWS DSSNFTESLG GLRRDQDNDR KLFSSTQNEE FGNRIHLLSH  300
HLSLPKTSAD VAMEKLLHFQ DSVPCKIRAK RGCATHPRSI AERVRRTRIS ERMRKLQELV  360
PNMDKQTNTA DMLDLAVEYI KDLQKQFKTL SDNRANCKCL NIQKPVSNQV V
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899049.10.0transcription factor bHLH130 isoform X1
TrEMBLA0A2P5F1I40.0A0A2P5F1I4_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010111430.11e-169(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-104bHLH family protein