PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899167.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 182aa    MW: 20770.6 Da    PI: 8.3102
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.1e-162072456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + ++t eq++ Le+ F +n++++ e++ +L+ +lg++ rqV +W+qN+Ra+ +
  XP_015899167.1 20 KKRLTYEQVKLLERSFTSNNKLQPERKHQLSLQLGIPPRQVAIWYQNKRARSR 72
                    567999*********************************************98 PP
2HD-ZIP_I/II1032.6e-3320110393
     HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     k+rl+ eqvklLE+sF++++kL+perK++l+ +Lg+ prqva+W+qn+RAR +t+ lE dy+aL+ ++++  +e+++L++eve+L++el++
  XP_015899167.1  20 KKRLTYEQVKLLERSFTSNNKLQPERKHQLSLQLGIPPRQVAIWYQNKRARSRTQSLELDYSALQLSLENALAEKQQLKREVERLNDELAK 110
                     9*************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7911474IPR001356Homeobox domain
SuperFamilySSF466891.25E-161583IPR009057Homeodomain-like
SMARTSM003895.0E-131678IPR001356Homeobox domain
CDDcd000869.39E-121775No hitNo description
PfamPF000465.1E-142072IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-172181IPR009057Homeodomain-like
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDMFNTQKSQ NQKKPSKNYK KRLTYEQVKL LERSFTSNNK LQPERKHQLS LQLGIPPRQV  60
AIWYQNKRAR SRTQSLELDY SALQLSLENA LAEKQQLKRE VERLNDELAK AQEMLFALNV  120
QTTTTTTTTA SSCARPVICP SLSCSDQEGM SSARSTIVHD LDVELEELYA CLIGSDGLIS  180
WD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899167.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899167.11e-133homeobox-leucine zipper protein ATHB-52
TrEMBLA0A067LF561e-54A0A067LF56_JATCU; Uncharacterized protein
STRINGXP_008367179.14e-53(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-29homeobox protein 52