PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899367.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 323aa    MW: 35595.7 Da    PI: 8.1488
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-183481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde+l+d v++ G g+W+t +++ g+ R++k+c++rw +yl
   XP_015899367.1 34 RGPWTPEEDEILADFVRREGEGQWRTLPKRAGLLRCGKSCRLRWMNYL 81
                     89******************************99************97 PP
2Myb_DNA-binding46.96.2e-1587132148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w++++
   XP_015899367.1  87 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNFWNTHM 132
                      678889****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-212583IPR009057Homeodomain-like
PROSITE profilePS5129416.3142981IPR017930Myb domain
SuperFamilySSF466894.21E-2831128IPR009057Homeodomain-like
SMARTSM007178.3E-133383IPR001005SANT/Myb domain
PfamPF002499.9E-163481IPR001005SANT/Myb domain
CDDcd001672.26E-103681No hitNo description
PROSITE profilePS5129423.77682136IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-2484137IPR009057Homeodomain-like
SMARTSM007171.8E-1386134IPR001005SANT/Myb domain
PfamPF002492.8E-1388131IPR001005SANT/Myb domain
CDDcd001671.18E-1092132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MRKPAASASS SSSANSTASK STTTPCCSKV GIKRGPWTPE EDEILADFVR REGEGQWRTL  60
PKRAGLLRCG KSCRLRWMNY LRPSVKRGRI APDEEDLILR LHRLLGNRWS LIAGRIPGRT  120
DNEIKNFWNT HMSKKLINQG IDPRTHKPLN PIFPEPVPNN TAVAYSNPNP NPKPNSSNPN  180
HSSSVSFKTE GSQPEMGNHI SRIINPDLSQ NLVADHGSKN NIGGGSVSKN MEFDSCGHGN  240
GNDNIGNCTT VIQSNIEDTF SSFLDSLIND DNGGFGNNQE QVQPNVVAPF MHELPPATPS  300
VNISQGWDYG GLWEQNSDMQ WIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25341367108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899367.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899367.10.0transcription repressor MYB5-like
SwissprotQ388504e-80MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A067KXJ95e-97A0A067KXJ9_JATCU; MYB family protein
STRINGPOPTR_0013s05300.11e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-79myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]