PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899563.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 145aa    MW: 16087.2 Da    PI: 9.2621
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.34.6e-11124145122
                     ---SS-EEEEEEE--TT-SS-E CS
            WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                     ldDgy+WrKYGqK+vk+s +pr
  XP_015899563.1 124 LDDGYRWRKYGQKSVKNSLHPR 145
                     59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-11111145IPR003657WRKY domain
SuperFamilySSF1182908.11E-9118145IPR003657WRKY domain
PROSITE profilePS5081112.794119145IPR003657WRKY domain
PfamPF031062.6E-7125145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDSQEPSNPP PPSLPSLLPP SLPISQNPPN CLFTPSLPSS SIHPPFPPSH HPPPLDVPQI  60
LHDIDWVGLL SGQLGGFGEL MNKPRMQNGE GDHEEKGGKR KGGRMSKTCR PRFAFQTRSV  120
DDILDDGYRW RKYGQKSVKN SLHPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899582.11e-102probable WRKY transcription factor 24
TrEMBLA0A1R3JZQ95e-33A0A1R3JZQ9_9ROSI; DNA-binding WRKY
TrEMBLB9I8Q57e-33B9I8Q5_POPTR; Uncharacterized protein
STRINGXP_006491470.17e-33(Citrus sinensis)
STRINGXP_006444939.17e-33(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.22e-16WRKY DNA-binding protein 43