PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899582.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 207aa    MW: 23355.7 Da    PI: 9.4864
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.7e-33128186159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  XP_015899582.1 128 LDDGYRWRKYGQKSVKNSLHPRSYYRCTHPTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 186
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-33115186IPR003657WRKY domain
SuperFamilySSF1182901.31E-28122187IPR003657WRKY domain
PROSITE profilePS5081128.323123188IPR003657WRKY domain
SMARTSM007748.5E-39128187IPR003657WRKY domain
PfamPF031062.5E-26129186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MHSSMDSQEP SNPPPPSLPS LLPPSLPISQ NPPNCLFTPS LPSSSIHPPF PPSHHPPPLD  60
VPQILHDIDW VGLLSGQLGG FGELMNKPRM QNGEGDHEEK GGKRKGGRMS KTCRPRFAFQ  120
TRSVDDILDD GYRWRKYGQK SVKNSLHPRS YYRCTHPTCN VKKQVQRLSK DTSIVVTTYE  180
GIHNHPCEKL METLTPLLKQ MQFLSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-25116185271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899582.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899582.11e-152probable WRKY transcription factor 24
SwissprotQ9FFS32e-53WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLB9I8Q52e-78B9I8Q5_POPTR; Uncharacterized protein
STRINGXP_006491470.13e-78(Citrus sinensis)
STRINGXP_006444939.13e-78(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.16e-55WRKY DNA-binding protein 43