PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899736.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 395aa    MW: 43529.5 Da    PI: 7.9095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-16133178147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+q+G+ +W++Ia+ +  gR++k+c++rw++ 
   XP_015899736.1 133 RGHWRPAEDSKLRELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 178
                      899*****************************.***********996 PP
2Myb_DNA-binding54.23.3e-17185228146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_015899736.1 185 RRAFSEEEEERLLVAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 228
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.519128179IPR017930Myb domain
SMARTSM007172.4E-14132181IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-28133226IPR009057Homeodomain-like
PfamPF002496.1E-16133178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-26134186IPR009057Homeodomain-like
CDDcd001671.95E-13136177No hitNo description
PROSITE profilePS5129426.043180234IPR017930Myb domain
SMARTSM007172.2E-14184232IPR001005SANT/Myb domain
PfamPF002494.5E-14185227IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-20187233IPR009057Homeodomain-like
CDDcd001671.22E-11187227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSFQYLKSDS EDFSGYNHQN MNTLPPPCPS PSQLSLSNTT FGGVMGLPEE KDSRSSEMGF  60
RILSSPSKQN RKPWGFQTLE NRGAKRNNIG VNDQEEEFLE ADKKELSLKL AEDPEGKSSA  120
SGKAAGHTKL CARGHWRPAE DSKLRELVAQ YGPQNWNLIA ENLEGRSGKS CRLRWFNQLD  180
PRINRRAFSE EEEERLLVAH RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKHREQSSV  240
YKRRKPPCSS SSSPLPKGFD VAFQNNAGSE STISSTIDDQ SASTCTDLSL TPSLNRVPLG  300
FFTKFPYGSQ MGLGDLDFDK LIGGGNGLYQ TGPMGGVTMV GVDQTGQSDS NSEVSAAESV  360
ATNKSNITAF GENENNKKEK ISSVAFIDFL GVGAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-331332337107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899736.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899736.10.0transcription factor MYB56-like
TrEMBLA0A2I4FP471e-156A0A2I4FP47_JUGRE; myb-related protein B-like
STRINGcassava4.1_024606m1e-154(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-73myb domain protein 105