PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899770.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WOX
Protein Properties Length: 371aa    MW: 40852 Da    PI: 6.8996
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox482.2e-15127187257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l    ++ +++V++WFqNrR + ++
  XP_015899770.1 127 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 187
                     89*****************99*************************************997 PP
2Wus_type_Homeobox106.61.6e-34126189265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
     XP_015899770.1 126 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 189
                        589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-14118194IPR009057Homeodomain-like
PROSITE profilePS5007111.418123188IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-8125193IPR009057Homeodomain-like
SMARTSM003896.6E-7125192IPR001356Homeobox domain
PfamPF000464.4E-13127187IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVVEYLDVHI VSVFLRYNTI GMQVCFSHLI GAKVSEIERG SLVTSQRSAF PSALYIQLHP  60
SRSSSHCSLL PSCTFYVFYF YFSFINHLGF SFNNISLLLS LFFHKMEDQS QDPNSPSNGS  120
ERNEPVRSRW TPKPEQILIL ESIFNSGMVN PPKDETVRIR KLLEKFGSVG DANVFYWFQN  180
RRSRSRRRQR QMQASQLEQR NQPQAAGGGG GGGGGGAIQY ESSSATTTNP LALGYGVSSS  240
FASSCPSSYL VGSSSSSSCG LTGDDHHGVD SFFPISASQI PFPEFEQSSS VTPVLCPEDT  300
SNMHFQSGFI TVFINGVPTE VHKGPIDLKT MFGQDVVLVH SSGIPIPMNE FGILMQSLQP  360
GESYFLVSRP T
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9827115e-39KF982711.1 Populus tomentosa WOX11/12b (WOX11/12b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024935295.10.0WUSCHEL-related homeobox 11-like
SwissprotQ6X7J32e-67WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A061F1791e-119A0A061F179_THECC; WUSCHEL related homeobox 11
STRINGEOY104421e-120(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-33WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]