PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015899964.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 743aa MW: 84688.3 Da PI: 6.819

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015899964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.3	6.9e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++Ak+ GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k++ +w++t +++ HnHel XP_015899964.1 59 EYYCTFAKQFGFSIRRNRTRGKdGVGRGVTRRDFTCHRGGYPQMKLSEDGKMQRNRKSSRCGCQAYMRIVKRThfdVPEWRITGFSNIHNHELL 152 69*************999874556679***************9***************98888777789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-17	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.656	518	566	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-7	540	564	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-6	541	568	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MSEGTSLIIE SSENGTDLSQ DDIGTMEETP EDTILSRQTS VNLVPFIGQR FVSQESAYEY 60 YCTFAKQFGF SIRRNRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG 120 CQAYMRIVKR THFDVPEWRI TGFSNIHNHE LLKSNEVCLL PAYSTLSPDD KSRICMFAKA 180 GMSARQMLRL MELEKGVRLG CLPFTEVDIR NLLQSFRNID RDNDAIDLIA MCKKMKDENS 240 NFKYDFKIDG HNRLQYISWS YASSVQLYEA FGDAVIFDTS HCLDAYDMLV GVWLGVDNHG 300 MTCFFGCVLL REENMQSFSW ALKTFLGFMK GKAPQTILTD HNMWLKEAIA TEMAQTKHAF 360 CILHIIAKFS DWFSVLLGSR YDEWKAEFHR LYNLDSVEDF EQEWKEMANN YGLNTNKHII 420 SLYTLRTFWA LAFLKHYFFA GMMHTSQTNS LADIVEFKDR AGAKQRMQQK GQRFCLKTGS 480 PIESHASSVL TPYAFGKLQE ELILAPQYAS ILVDEDCFQV RHHTQMDGAW KVIWHPCQEH 540 ISCSCHLFEF SGILCRHVLR VLSTNNCFRI PDQYLPLRWR GLSSSSTNAF QPMPIREHSR 600 KVQFLESLSS ALVAESVQSE EHLDAACEQV SMVVSHIKDL PKAVHGANDI PNDISYNRPS 660 DSLILQEVED ADGIVNFSIG NPHESITLGK LKEKRLGVGD DTSKKRRHCS GLCCGHCGQY 720 GYDASECHIM GGDNLNGEAL GYL

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MSEGTSLIIE SSENGTDLSQ DDIGTMEETP EDTILSRQTS VNLVPFIGQR FVSQESAYEY  60
YCTFAKQFGF SIRRNRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG  120
CQAYMRIVKR THFDVPEWRI TGFSNIHNHE LLKSNEVCLL PAYSTLSPDD KSRICMFAKA  180
GMSARQMLRL MELEKGVRLG CLPFTEVDIR NLLQSFRNID RDNDAIDLIA MCKKMKDENS  240
NFKYDFKIDG HNRLQYISWS YASSVQLYEA FGDAVIFDTS HCLDAYDMLV GVWLGVDNHG  300
MTCFFGCVLL REENMQSFSW ALKTFLGFMK GKAPQTILTD HNMWLKEAIA TEMAQTKHAF  360
CILHIIAKFS DWFSVLLGSR YDEWKAEFHR LYNLDSVEDF EQEWKEMANN YGLNTNKHII  420
SLYTLRTFWA LAFLKHYFFA GMMHTSQTNS LADIVEFKDR AGAKQRMQQK GQRFCLKTGS  480
PIESHASSVL TPYAFGKLQE ELILAPQYAS ILVDEDCFQV RHHTQMDGAW KVIWHPCQEH  540
ISCSCHLFEF SGILCRHVLR VLSTNNCFRI PDQYLPLRWR GLSSSSTNAF QPMPIREHSR  600
KVQFLESLSS ALVAESVQSE EHLDAACEQV SMVVSHIKDL PKAVHGANDI PNDISYNRPS  660
DSLILQEVED ADGIVNFSIG NPHESITLGK LKEKRLGVGD DTSKKRRHCS GLCCGHCGQY  720
GYDASECHIM GGDNLNGEAL GYL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015899964.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015899964.1	0.0	protein FAR1-RELATED SEQUENCE 11-like isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2N9EMT4	0.0	A0A2N9EMT4_FAGSY; Uncharacterized protein
STRING	EMJ26407	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]