PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015900006.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

CAMTA

Protein Properties

Length: 894aa MW: 100860 Da PI: 7.4266

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015900006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.9	7.8e-53	3	118	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 + ++rwl+++ei+aiL n++++++ ++ + pksg++iL++rk++r+frkDG++wkkkkdgktv+E+he+LKvg e +++yYah+++nptf rr XP_015900006.1 3 EARSRWLRPNEIHAILCNYKRFTINVKPVNLPKSGTIILFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGDEERIHVYYAHGQDNPTFVRR 97 459****************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 cywlL+++le+ivlvhy+e++ XP_015900006.1 98 CYWLLDKSLEHIVLVHYRETQ 118 ****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.299	1	123	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.2E-77	1	118	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.1E-46	3	116	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.29E-15	345	432	IPR014756	Immunoglobulin E-set
Pfam	PF01833	3.9E-4	346	431	IPR002909	IPT domain
SuperFamily	SSF48403	3.11E-18	531	643	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.4E-8	532	610	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.25E-15	532	640	No hit	No description
Gene3D	G3DSA:1.25.40.20	6.9E-18	534	644	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.237	539	652	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	4.3E-6	581	610	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.915	581	613	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	5.84E-7	692	795	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	33	725	747	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.327	729	755	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.272	745	774	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	270	748	766	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0011	767	789	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.768	768	792	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.1E-4	769	789	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	10	847	869	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.279	849	877	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence Send to blast
MEEARSRWLR PNEIHAILCN YKRFTINVKP VNLPKSGTII LFDRKMLRNF RKDGHNWKKK 60 KDGKTVKEAH EHLKVGDEER IHVYYAHGQD NPTFVRRCYW LLDKSLEHIV LVHYRETQEL 120 QGSPVTPVNS NSSSASDPSA PWPLSEELDS GTNHAYYAGE NEILVSSDNL TVRNHEQRLH 180 DINTLEWDEL LAIHDPNNSV ASRDKVSFFN QQNQVAGNGL LHGGATSLSP EILSFNILTN 240 PTATSGDIGY NLPQSAYVPT VGAQLNSNVQ RRDSIGAGAG GSLDVLVNDG LHSQDSFGRW 300 INDFITDSSD SVDGSVLETS IPSAQDSFSS LAMHLQSPVS EQIFNITDVS PAWAYSNEKT 360 KILLTGFFRE EYQHLSKSDL LCVCGDISVT AEIVQVGVYR CLVSPHSPGL VNLYISLEGF 420 KPISQVLNFE YRTPALSDQI VSSEERDRWE EFQMQMRLAY LLFSTSKSLE ILTSKASPNA 480 LKEAKKYAQK TSHVSNSWAI FIKSIEDSKI PFSQAKDSLF KLILRNRLKD WLLERVVYGS 540 KISEFDAQGQ GVIHLCAILG YTWAISLFSA SGLSLDFRDK HGWTALHWAA YFGREKMVAV 600 LLSAGAKPNL VTDPTSDNPG GRTAADLASL NGYDGLAGYL SEKALVEQFK DMSIAGNVSG 660 TLDTSTNDFV NPENLCEEEL NLKETLAAYR TAADAAARIQ VAFREHSLKI RTQAVENSNP 720 EIEARNIVAA MKIQHAFRNY ESRKKMAAAA RIQHRFRTWK IRKEFLNLRR QAIKIQAAFR 780 GYQVRRQYRK ILWSVGVLEK AILRWRLKRR GFRGLQVDPI EAVDDQFQGS DTEEDFYKAS 840 KKQAEERVER AVVSVQAMFR SKKAQEEYRR MKMAHNQAML EYEGFLDPEN DLVG

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence Send to blast

MEEARSRWLR PNEIHAILCN YKRFTINVKP VNLPKSGTII LFDRKMLRNF RKDGHNWKKK  60
KDGKTVKEAH EHLKVGDEER IHVYYAHGQD NPTFVRRCYW LLDKSLEHIV LVHYRETQEL  120
QGSPVTPVNS NSSSASDPSA PWPLSEELDS GTNHAYYAGE NEILVSSDNL TVRNHEQRLH  180
DINTLEWDEL LAIHDPNNSV ASRDKVSFFN QQNQVAGNGL LHGGATSLSP EILSFNILTN  240
PTATSGDIGY NLPQSAYVPT VGAQLNSNVQ RRDSIGAGAG GSLDVLVNDG LHSQDSFGRW  300
INDFITDSSD SVDGSVLETS IPSAQDSFSS LAMHLQSPVS EQIFNITDVS PAWAYSNEKT  360
KILLTGFFRE EYQHLSKSDL LCVCGDISVT AEIVQVGVYR CLVSPHSPGL VNLYISLEGF  420
KPISQVLNFE YRTPALSDQI VSSEERDRWE EFQMQMRLAY LLFSTSKSLE ILTSKASPNA  480
LKEAKKYAQK TSHVSNSWAI FIKSIEDSKI PFSQAKDSLF KLILRNRLKD WLLERVVYGS  540
KISEFDAQGQ GVIHLCAILG YTWAISLFSA SGLSLDFRDK HGWTALHWAA YFGREKMVAV  600
LLSAGAKPNL VTDPTSDNPG GRTAADLASL NGYDGLAGYL SEKALVEQFK DMSIAGNVSG  660
TLDTSTNDFV NPENLCEEEL NLKETLAAYR TAADAAARIQ VAFREHSLKI RTQAVENSNP  720
EIEARNIVAA MKIQHAFRNY ESRKKMAAAA RIQHRFRTWK IRKEFLNLRR QAIKIQAAFR  780
GYQVRRQYRK ILWSVGVLEK AILRWRLKRR GFRGLQVDPI EAVDDQFQGS DTEEDFYKAS  840
KKQAEERVER AVVSVQAMFR SKKAQEEYRR MKMAHNQAML EYEGFLDPEN DLVG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015900006.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015900006.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2P5F618	0.0	A0A2P5F618_TREOI; Notch
STRING	XP_009369951.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]