PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015900007.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

CAMTA

Protein Properties

Length: 892aa MW: 100619 Da PI: 7.4266

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015900007.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.9	7.7e-53	3	118	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 + ++rwl+++ei+aiL n++++++ ++ + pksg++iL++rk++r+frkDG++wkkkkdgktv+E+he+LKvg e +++yYah+++nptf rr XP_015900007.1 3 EARSRWLRPNEIHAILCNYKRFTINVKPVNLPKSGTIILFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGDEERIHVYYAHGQDNPTFVRR 97 459****************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 cywlL+++le+ivlvhy+e++ XP_015900007.1 98 CYWLLDKSLEHIVLVHYRETQ 118 ****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.502	1	123	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.2E-77	1	118	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.1E-46	3	116	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.29E-15	343	430	IPR014756	Immunoglobulin E-set
Pfam	PF01833	3.9E-4	344	429	IPR002909	IPT domain
SuperFamily	SSF48403	3.11E-18	529	641	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.4E-8	530	608	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.24E-15	530	638	No hit	No description
Gene3D	G3DSA:1.25.40.20	6.8E-18	532	642	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.237	537	650	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.915	579	611	IPR002110	Ankyrin repeat
SMART	SM00248	4.3E-6	579	608	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	5.84E-7	690	793	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	33	723	745	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.327	727	753	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.272	743	772	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	270	746	764	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0011	765	787	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.768	766	790	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.1E-4	767	787	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	10	845	867	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.279	847	875	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MEEARSRWLR PNEIHAILCN YKRFTINVKP VNLPKSGTII LFDRKMLRNF RKDGHNWKKK 60 KDGKTVKEAH EHLKVGDEER IHVYYAHGQD NPTFVRRCYW LLDKSLEHIV LVHYRETQEG 120 SPVTPVNSNS SSASDPSAPW PLSEELDSGT NHAYYAGENE ILVSSDNLTV RNHEQRLHDI 180 NTLEWDELLA IHDPNNSVAS RDKVSFFNQQ NQVAGNGLLH GGATSLSPEI LSFNILTNPT 240 ATSGDIGYNL PQSAYVPTVG AQLNSNVQRR DSIGAGAGGS LDVLVNDGLH SQDSFGRWIN 300 DFITDSSDSV DGSVLETSIP SAQDSFSSLA MHLQSPVSEQ IFNITDVSPA WAYSNEKTKI 360 LLTGFFREEY QHLSKSDLLC VCGDISVTAE IVQVGVYRCL VSPHSPGLVN LYISLEGFKP 420 ISQVLNFEYR TPALSDQIVS SEERDRWEEF QMQMRLAYLL FSTSKSLEIL TSKASPNALK 480 EAKKYAQKTS HVSNSWAIFI KSIEDSKIPF SQAKDSLFKL ILRNRLKDWL LERVVYGSKI 540 SEFDAQGQGV IHLCAILGYT WAISLFSASG LSLDFRDKHG WTALHWAAYF GREKMVAVLL 600 SAGAKPNLVT DPTSDNPGGR TAADLASLNG YDGLAGYLSE KALVEQFKDM SIAGNVSGTL 660 DTSTNDFVNP ENLCEEELNL KETLAAYRTA ADAAARIQVA FREHSLKIRT QAVENSNPEI 720 EARNIVAAMK IQHAFRNYES RKKMAAAARI QHRFRTWKIR KEFLNLRRQA IKIQAAFRGY 780 QVRRQYRKIL WSVGVLEKAI LRWRLKRRGF RGLQVDPIEA VDDQFQGSDT EEDFYKASKK 840 QAEERVERAV VSVQAMFRSK KAQEEYRRMK MAHNQAMLEY EGFLDPENDL VG

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MEEARSRWLR PNEIHAILCN YKRFTINVKP VNLPKSGTII LFDRKMLRNF RKDGHNWKKK  60
KDGKTVKEAH EHLKVGDEER IHVYYAHGQD NPTFVRRCYW LLDKSLEHIV LVHYRETQEG  120
SPVTPVNSNS SSASDPSAPW PLSEELDSGT NHAYYAGENE ILVSSDNLTV RNHEQRLHDI  180
NTLEWDELLA IHDPNNSVAS RDKVSFFNQQ NQVAGNGLLH GGATSLSPEI LSFNILTNPT  240
ATSGDIGYNL PQSAYVPTVG AQLNSNVQRR DSIGAGAGGS LDVLVNDGLH SQDSFGRWIN  300
DFITDSSDSV DGSVLETSIP SAQDSFSSLA MHLQSPVSEQ IFNITDVSPA WAYSNEKTKI  360
LLTGFFREEY QHLSKSDLLC VCGDISVTAE IVQVGVYRCL VSPHSPGLVN LYISLEGFKP  420
ISQVLNFEYR TPALSDQIVS SEERDRWEEF QMQMRLAYLL FSTSKSLEIL TSKASPNALK  480
EAKKYAQKTS HVSNSWAIFI KSIEDSKIPF SQAKDSLFKL ILRNRLKDWL LERVVYGSKI  540
SEFDAQGQGV IHLCAILGYT WAISLFSASG LSLDFRDKHG WTALHWAAYF GREKMVAVLL  600
SAGAKPNLVT DPTSDNPGGR TAADLASLNG YDGLAGYLSE KALVEQFKDM SIAGNVSGTL  660
DTSTNDFVNP ENLCEEELNL KETLAAYRTA ADAAARIQVA FREHSLKIRT QAVENSNPEI  720
EARNIVAAMK IQHAFRNYES RKKMAAAARI QHRFRTWKIR KEFLNLRRQA IKIQAAFRGY  780
QVRRQYRKIL WSVGVLEKAI LRWRLKRRGF RGLQVDPIEA VDDQFQGSDT EEDFYKASKK  840
QAEERVERAV VSVQAMFRSK KAQEEYRRMK MAHNQAMLEY EGFLDPENDL VG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015900007.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015900007.1	0.0	calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2P5F618	0.0	A0A2P5F618_TREOI; Notch
STRING	XP_009369951.1	0.0	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]