PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015900361.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TCP
Protein Properties Length: 320aa    MW: 35515.5 Da    PI: 9.0647
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015900361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.82.8e-32552022130
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +   ++++s  +s +  g        
  XP_015900361.1  55 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKQEIDELPPLPVPPGNIGLNHHQSLLTSREAGGttmqtnee 149
                     689*************************************************************8888855533333333332222222222223 PP

             TCP  89 ..........kaaksaakskksqksaasalnlakesr.......................akarararertrekm 130
                               +                       +sr                       a++ a+++er++ ++
  XP_015900361.1 150 qegfrnmvgwE----------------------GSSRlprsnnfwnsdalwrarskevvvAREMANNNERDKAEQ 202
                     33332333221......................122233333333333232233333322333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.0257115IPR017887Transcription factor TCP subgroup
PfamPF036346.9E-3057202IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MITSTSKEGD NLQPREEAGN STRTDHHGKV TKALSNSTPW LRLKDPRIVR VSRAFGGKDR  60
HSKVCTIRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLNAAKQ EIDELPPLPV  120
PPGNIGLNHH QSLLTSREAG GTTMQTNEEQ EGFRNMVGWE GSSRLPRSNN FWNSDALWRA  180
RSKEVVVARE MANNNERDKA EQNNDQNNLL QRTGNHPFLP GLLNNAAPYG YHWDPSSSNY  240
LVPPPHLGGH GFTPPSQADH LHNLNIMSAP STLSLSTGSQ FLVCPPPTGI TQPYFPNSNS  300
AAAASGEIDA RQVQWEYSTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1862116155Putative transcription factor PCF6
5zkt_B1e-1862116155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015900361.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900361.10.0transcription factor TCP13-like isoform X2
TrEMBLA0A061EN211e-109A0A061EN21_THECC; Plastid transcription factor 1, putative isoform 1
STRINGEOY036991e-109(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-52plastid transcription factor 1