PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015900396.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YA
Protein Properties Length: 325aa    MW: 35382.9 Da    PI: 9.6122
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015900396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.21.6e-29156213158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRaklee.ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++I++RRq+Rak++  e++l  ++rk y+heSRh hAlrRpRg+gGrF
  XP_015900396.1 156 DGPIYVNAKQYHGIIRRRQSRAKAAVlENRL-PRTRKAYMHESRHLHALRRPRGCGGRF 213
                     57**********************9879999.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-32154216IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.286155216IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-25158213IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-22158180IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-22190213IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVTMAMQTIF FKEHEGLVPN TIGQLSSVPS APWWSTFGSP SIYGESCGQL KQLSMEPPGS  60
GDQLSATKQA GRGTELGPDK GNTNQFTIFP GDGQKHQATI SLQTSLPEYN ARFELGFGQP  120
MICTKYPYVD QRYGVFSYGP QISGRIMLPL NLTTDDGPIY VNAKQYHGII RRRQSRAKAA  180
VLENRLPRTR KAYMHESRHL HALRRPRGCG GRFLNTKNLD NVKGGTEAKK VGDGQLSQPS  240
GSQSSEVLQS DSGTLNSSKE INGSGSNISG SEVTSMYSRG DLGHLPISHL GRAIHSLSDM  300
MDSNRGIVMP TKWIAAGDTC CNLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-17158221466NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015900396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900395.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_024922883.10.0nuclear transcription factor Y subunit A-10-like
TrEMBLA0A2P5AU491e-176A0A2P5AU49_TREOI; Nuclear transcription factor Y subunit A
STRINGXP_008387119.11e-170(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.15e-57nuclear factor Y, subunit A2