PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015900408.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25076.3 Da    PI: 7.6339
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015900408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.62.2e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri ++  rqv fskRr+g++KKA+ELSvLCd++ a+++fs++gk ye+s+
  XP_015900408.1  9 KRIGDTQSRQVAFSKRRKGLFKKAHELSVLCDVDLALVVFSTSGKTYEFST 59
                    7999*********************************************96 PP
2K-box325e-12861641896
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     ++e a  ++ ++n q+ +R +   +Le+L+  ++ qLeq L+ sl+++   K +l+++++  l kkek++ een++ ++
  XP_015900408.1  86 KEECADPRNGNSNVQSVKRAFDSLNLEQLNSIDIVQLEQLLNLSLRQVQYSKAQLMMKSMAVLHKKEKRVVEENQMVQN 164
                     5777777889999**999*********************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.245161IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-31160IPR002100Transcription factor, MADS-box
CDDcd002655.82E-33279No hitNo description
SuperFamilySSF554558.89E-27378IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.39382176IPR002487Transcription factor, K-box
PfamPF014862.2E-886164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRRGKVEVKR IGDTQSRQVA FSKRRKGLFK KAHELSVLCD VDLALVVFST SGKTYEFSTG  60
NSISKILERH GSKSNSQKIA CGNDPKEECA DPRNGNSNVQ SVKRAFDSLN LEQLNSIDIV  120
QLEQLLNLSL RQVQYSKAQL MMKSMAVLHK KEKRVVEENQ MVQNENHIGV HMGNKELNIM  180
AVDSFQTYED DDDEGFHHAP IQMLGLENED GGVSYYRGGS LSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-16376281Myocyte-specific enhancer factor 2A
3kov_B2e-16376281Myocyte-specific enhancer factor 2A
3kov_I2e-16376281Myocyte-specific enhancer factor 2A
3kov_J2e-16376281Myocyte-specific enhancer factor 2A
3p57_A2e-16376281Myocyte-specific enhancer factor 2A
3p57_B2e-16376281Myocyte-specific enhancer factor 2A
3p57_C2e-16376281Myocyte-specific enhancer factor 2A
3p57_D2e-16376281Myocyte-specific enhancer factor 2A
3p57_I2e-16376281Myocyte-specific enhancer factor 2A
3p57_J2e-16376281Myocyte-specific enhancer factor 2A
5f28_A2e-16176182MEF2C
5f28_B2e-16176182MEF2C
5f28_C2e-16176182MEF2C
5f28_D2e-16176182MEF2C
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015900408.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900408.11e-165MADS-box transcription factor 14-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2313022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.16e-32MIKC_MADS family protein