PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015900491.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 212aa MW: 23020.2 Da PI: 8.2827

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015900491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.9	1.8e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++Cvl+ + p++q +++ +++k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_015900491.1 2 SCNGCRVLRKGCSDKCVLRSSLhwidsPEAQGNATLFLAKFFGRSDLISFISAVPDHQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQT 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l XP_015900491.1 97 AVETVLS 103 *998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.956	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.3E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MSCNGCRVLR KGCSDKCVLR SSLHWIDSPE AQGNATLFLA KFFGRSDLIS FISAVPDHQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQTAVET VLSGGVLRPI AGILTQNVDE 120 SSETYTRNAC MLPNLYYPSL PSIYNPKQGQ PLDTDMSLST NFGTGGRGRA WSFSVEKRLR 180 DSVSVSSEES VITTGGLGIG ERKERKLLNL FV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015900491.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015885030.1	1e-156	LOB domain-containing protein 39-like
Refseq	XP_015900491.1	1e-156	LOB domain-containing protein 39-like
Swissprot	Q9SZE8	1e-61	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A314YVK8	9e-99	A0A314YVK8_PRUYE; LOB domain-containing protein 39
STRING	EMJ25206	7e-96	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-62	LOB domain-containing protein 39