PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015901112.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GeBP

Protein Properties

Length: 264aa MW: 31736.1 Da PI: 8.1716

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015901112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	74.4	2e-23	42	137	5	98
DUF573 5 rlwseeDeivlLqGlidfkaktgk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfs.kehdqkifelskkiWg 97 +wse+Dei++L Gli+ ++ + ++++++fy+ +k+s+ ++vs++q+++Ki+rLK+Kf +++k++ + + s++ +h + +felsk++W+ XP_015901112.1 42 TVWSEKDEITILEGLIKLQKICSSlGKKSNMNQFYSLIKDSLVADVSSEQFTDKIKRLKRKFMQNKKNKLADPNLSIDyDSHSKRVFELSKQMWD 136 58**************88776647788********************************99955555555542578899*******8 PP DUF573 98 s 98 + XP_015901112.1 137 Q 137 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.4E-19	43	136	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MASSHSTSTY ESSDYEMEVV RDSEEEEEYV PEEKKRRNKK ITVWSEKDEI TILEGLIKLQ 60 KICSSLGKKS NMNQFYSLIK DSLVADVSSE QFTDKIKRLK RKFMQNKKNK LADPNLSIDY 120 DSHSKRVFEL SKQMWDQCVW EPESEEKRKT KEMVNNKIDD SADDDDKKKI VKKKKKRKIT 180 TESVNVYHKA FHKYCEDRGL EVKWLEKEER DKLDNLWRQF SELECDLRIL EIKYNRLRND 240 LDVTIYRLLI RCYNNFPALF SFDY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	38	KKRRNK
2	171	177	KKKKKRK
3	172	177	KKKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015901112.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015901112.1	0.0	transcription factor STKL2-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28384	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00610.1	1e-11	DNA-binding storekeeper protein-related transcriptional regulator