PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015901246.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 398aa MW: 45814 Da PI: 6.3762

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015901246.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.5e-21	55	141	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAke+GFs+r s++k+ k ++e+++ +fvC keg ++ ++ + ++r r tr +Ckakl v ++k+gk+++t +++eH+H+l+ XP_015901246.1 55 EFYIKYAKEAGFSIRSSSTKRCKGTNEVVRIEFVCFKEGVSSIKDGE---RKRCRGMTRENCKAKLAVVRSKTGKFVITVFVEEHSHPLS 141 6***************************************99877...99999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-19	55	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.5E-31	262	355	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MSVEQLEANS DCRRVEDISL LSHSKSMDDV YIPQVAENYK PKVGQEFESI DGIHEFYIKY 60 AKEAGFSIRS SSTKRCKGTN EVVRIEFVCF KEGVSSIKDG ERKRCRGMTR ENCKAKLAVV 120 RSKTGKFVIT VFVEEHSHPL SNPRRVHLVR SHRSVSEAKK SLTLQFSAAN VPTHQQISIL 180 EFEAEGIENI GCTKKDIYNH EAKVQNELRG QDAELLKEYF LTEQEKDPCF FFKIDVDDDG 240 KLKHCFWADS VSRRACGCFG DVVVFDTTYN TNQYGMIFAP LMGVNNHGQT MLFACAFLSD 300 EKTESFVWLF ELLKDSMPTN NSKMIITDQD LAMTKAIVQS LPNTFHTYCS WHILEKFSTY 360 LNAITYRDFY KDFQQCIWES ECPEEFEKKW VTTIEKAS

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MSVEQLEANS DCRRVEDISL LSHSKSMDDV YIPQVAENYK PKVGQEFESI DGIHEFYIKY  60
AKEAGFSIRS SSTKRCKGTN EVVRIEFVCF KEGVSSIKDG ERKRCRGMTR ENCKAKLAVV  120
RSKTGKFVIT VFVEEHSHPL SNPRRVHLVR SHRSVSEAKK SLTLQFSAAN VPTHQQISIL  180
EFEAEGIENI GCTKKDIYNH EAKVQNELRG QDAELLKEYF LTEQEKDPCF FFKIDVDDDG  240
KLKHCFWADS VSRRACGCFG DVVVFDTTYN TNQYGMIFAP LMGVNNHGQT MLFACAFLSD  300
EKTESFVWLF ELLKDSMPTN NSKMIITDQD LAMTKAIVQS LPNTFHTYCS WHILEKFSTY  360
LNAITYRDFY KDFQQCIWES ECPEEFEKKW VTTIEKAS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015901246.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015901246.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067D5X9	1e-156	A0A067D5X9_CITSI; Uncharacterized protein
STRING	XP_004297991.1	1e-148	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-64	FAR1-related sequence 5