PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901407.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 390aa    MW: 44669.4 Da    PI: 4.4981
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.21.3e-33241152102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k ye+++de+++++isw+e+++ fv++d+++f+ ++LpkyFkhsnf+SF+RQLn+YgF+kv++++         w F+++ F +gk  ll++
  XP_015901407.1  24 FLRKCYEMVDDEATNSIISWNETNDCFVIWDMTQFSVQLLPKYFKHSNFSSFMRQLNIYGFRKVDTDR---------WVFANDGFIRGKMYLLKN 109
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k+
  XP_015901407.1 110 IVRRKH 115
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-3220113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.6E-4920113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3421113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-182447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-2924113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVKSVDKKGN NNDGSESLGS VAPFLRKCYE MVDDEATNSI ISWNETNDCF VIWDMTQFSV  60
QLLPKYFKHS NFSSFMRQLN IYGFRKVDTD RWVFANDGFI RGKMYLLKNI VRRKHPQSLD  120
QRKASQPKET PDEQCEKIED GLWKEVENLK IDKNALMQEL VKLRQHQETA DNKLLLLRDR  180
IQGMEKNQQQ LLSFLVMAMQ SPGFLVQLLH PKENNWRLAE ADNMLEQDDK SVSSDAMIVR  240
YQPPVDETSQ PVCTPTSGAG TTPESDPFPD GIQDFFMNSD FMKILMDEKL CSLESHAPFI  300
LPDLSDDCSW EQLLLASPSL ENSEFTKHEG KEHVDSEMEV ELTGPGIALE NFQSFDSLIK  360
EMEKSQNLEL QTEKIDLLSS NNKCGTPTEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-201411319129Heat shock factor protein 1
5d5v_B5e-201411319129Heat shock factor protein 1
5d5v_D5e-201411319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901407.10.0heat stress transcription factor A-8
SwissprotQ9S7U51e-103HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLW9R1410.0W9R141_9ROSA; Heat stress transcription factor A-8
STRINGXP_010093311.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-105heat shock transcription factor A8