PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901482.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 295aa    MW: 31809.5 Da    PI: 7.05
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.6e-14197242655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k+Lq
  XP_015901482.1 197 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKHLQ 242
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-16194254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.05E-13195246No hitNo description
Gene3DG3DSA:4.10.280.102.4E-16196254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-13197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-11197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MQSTPGGSSS SGGGGGVGGG VSRVGLARFR SAPASWLEAL LDDEEEDPLK PNQCLTQLLA  60
DNTPAPSSTN TVPFAPSADP GGSFEAGFAR QNSSPADFLG NSSGSSETYF SNFGIPANFD  120
LVSPNINVSS TTGSKRVREG EAQPAQHFSP KLSSQLKGEQ ASGQVSGLLD MEMEKLLEDS  180
VPCRVRAKRG FATHPRSIAE RVRRTRISDR IRKLQELVPN MDKQTNTADM LEEAVEYVKH  240
LQRQIQKGEQ ASGQVSGLLD MEMEKLLEDS VPCRVRAKRG FATHPRSIAE RVRIH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901482.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024923286.10.0transcription factor bHLH80-like
SwissprotQ9C8P87e-85BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A061FKW93e-99A0A061FKW9_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2
STRINGEOY173211e-98(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-65bHLH family protein