PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901492.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 250aa    MW: 29105.6 Da    PI: 8.2707
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l + v+++G g W+ I+++ g++R++k+c++rw++yl
   XP_015901492.1 13 KGAWSKEEDDRLRRWVEKHGEGKWHQIPSKAGLNRCRKSCRLRWLNYL 60
                     79********************************************97 PP
2Myb_DNA-binding51.91.8e-1666110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g++T++E +ll++++k+lG++ W++Ia +++ gRt++++k++w+ +
   XP_015901492.1  66 KGKFTEDEVDLLLRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNGH 110
                      79********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.519860IPR017930Myb domain
SuperFamilySSF466899.54E-3010107IPR009057Homeodomain-like
SMARTSM007174.1E-151262IPR001005SANT/Myb domain
PfamPF002492.0E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-221467IPR009057Homeodomain-like
CDDcd001674.23E-111560No hitNo description
PROSITE profilePS5129425.55361115IPR017930Myb domain
SMARTSM007171.5E-1565113IPR001005SANT/Myb domain
PfamPF002493.0E-1566110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2368115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLHSMDSSLG LRKGAWSKEE DDRLRRWVEK HGEGKWHQIP SKAGLNRCRK SCRLRWLNYL  60
KPEIKKGKFT EDEVDLLLRL HKLLGNRWSL IAGRLPGRTA NDVKNYWNGH LHGKIKNKEI  120
NGDKKTHGNG TKAVMPRPRT STKRFPSMSK NYASTITMDN INRPHQQQNF NQKSLDEDLH  180
WWENLLDNAT PNEEATYTVS GFEGEPISKL PHDDQEDHDP VGPNNIGDVF VEDDQSFWRE  240
FTVDIDLWDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-241111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901492.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901492.10.0transcription factor MYB113-like
SwissprotQ9FNV91e-61MY113_ARATH; Transcription factor MYB113
TrEMBLA0A1Q1N6L33e-74A0A1Q1N6L3_LIQFO; MYB transcription factor 113
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]