PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901518.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family BBR-BPC
Protein Properties Length: 279aa    MW: 30788.5 Da    PI: 10.6444
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind249.81.8e-7694279116301
       GAGA_bind 116 epqledsavelreeeklealpieeaaeeakekkkkkk..rqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDest 207
                     +++le+    ++   + + +p+ e +++++ ++k+ k  rq++++  ++ka k+k+ ++++  ++k++++  +++k+ekk+ +l +++++++ s+
  XP_015901518.1  94 QSNLEPG---ISVAPIRSIPPVAEPTKNTDSASKPAKvrRQKGATHVASKALKPKQMKKNPSTSKKTKGQTiPQAKREKKNPNLDMEKINFNFSG 185
                     2333332...3334445666777766666666555541144555566677778888888888888888877899********************* PP

       GAGA_bind 208 lPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     +P P CsCtG++r+CYkWG+GGWqS+CCt++iS yPLP+s+ r gaR+agrKmS+ga+ klL kLa+eGydls pvDLk hWA+HGtnkfvti+
  XP_015901518.1 186 VPSPYCSCTGIPRVCYKWGAGGWQSSCCTINISEYPLPMSPSRSGARMAGRKMSNGAYVKLLLKLATEGYDLSRPVDLKGHWARHGTNKFVTIK 279
                     *********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.1E-7233279IPR010409GAGA-binding transcriptional activator
SMARTSM012261.5E-7663279IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MFWVNGFLIF WLVVRGIYGF WSDFCAFALG SFAYVVDAAL KYQNKVVKMG TYSNRNPIMP  60
NANAGASVSH FSWFYPGTFF PSSKASSNTL HETQSNLEPG ISVAPIRSIP PVAEPTKNTD  120
SASKPAKVRR QKGATHVASK ALKPKQMKKN PSTSKKTKGQ TIPQAKREKK NPNLDMEKIN  180
FNFSGVPSPY CSCTGIPRVC YKWGAGGWQS SCCTINISEY PLPMSPSRSG ARMAGRKMSN  240
GAYVKLLLKL ATEGYDLSRP VDLKGHWARH GTNKFVTIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901518.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901518.10.0protein BASIC PENTACYSTEINE7 isoform X1
SwissprotO822862e-69BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A2N9GYJ81e-124A0A2N9GYJ8_FAGSY; Uncharacterized protein
STRINGcassava4.1_015308m1e-106(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1643089
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.13e-72basic pentacysteine 7