PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901565.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 816aa    MW: 93784.3 Da    PI: 8.4697
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901565.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.21.8e-2059142490
            FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     n YA + GFs+rks+ ++   +++i +r+f Csk+g +++ ++  e ++ +r etrtgCka ++ + + ++ w++t l+l+HnHela
  XP_015901565.1  59 NMYALRKGFSIRKSTIRRD-AQRNIRQREFLCSKQGLQHDGDSG-EVKKLRRLETRTGCKALIRFTVD-NSIWKITYLNLQHNHELA 142
                     78*************9998.6666****************9999.99999*****************9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1859142IPR004330FAR1 DNA binding domain
PfamPF105519.8E-32264358IPR018289MULE transposase domain
PROSITE profilePS509669.99543579IPR007527Zinc finger, SWIM-type
PfamPF044343.9E-5551579IPR007527Zinc finger, SWIM-type
SMARTSM005754.4E-5554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MDEFIGGIDD GEGSGNIHHD DTVILDYNKG RIDEKELDDE ELKLGIEVFS EEEAYNLCNM  60
YALRKGFSIR KSTIRRDAQR NIRQREFLCS KQGLQHDGDS GEVKKLRRLE TRTGCKALIR  120
FTVDNSIWKI TYLNLQHNHE LANFEERQFL RSGRRIPQGH AQVISSMVDA GIRATRSYSY  180
LANEVGGAEN VGFTKKDCQN FLQKRKQKVI EGGDGQSLIN HFKHKQAEDP NFFYTVQVDQ  240
QNRMTNFFWR DGRSKLDYEC FGDVVCFDTT FRTNKYNLIC APFVGVNHHW KNVLFGCAFL  300
LDESIDSFVW LFETFLEAMG NKQPKTIFTD EDRSMASAIE VALPKACHRL CTWHIAKNAT  360
KHLASYYGNP EFKKHFNKCF HGCYNEVEFQ AAWDDMILKF NLDSHPWLKK LYALRQKWCQ  420
AFSLDTFSAN IKSTQRSEST NNVFHQISTK TMDLVDFVHH YENKIDEMRL AELEEDFRCR  480
NGMPHLRVKS GIFKHAASEY TMKIFSFFEQ ELMSCFGVRM TEISNNGIDY IYEAFEEGCK  540
RIFKVQFSSL TSTVSCSCKL FESMGLLCCH ALKVLDSKNF TCIPEQYIMK RWSKGAKKGI  600
VASYDLSDSL DKEKKSAQSL RLSELMHQGN FVFSVGSLSD LGTKIVKQKL MEAMKILEND  660
EEIANVMGNL NKKDNQINNN VSSNECPVLN PPIIRAKGVT NARIKNSLEK RKKKSAKVGS  720
SSQSSRPNTM SFAFLNRPFV MEVQKHNNSL MEVQKHNNSS MICRNMPTAA ARQQYSSNTA  780
APAAWQHQQQ HRSTSSTAAP ASTQQQQQQQ WQQQQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901565.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901565.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251NC830.0A0A251NC83_PRUPE; Uncharacterized protein
STRINGXP_008241738.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-116FAR1-related sequence 5