PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901602.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 379aa    MW: 41370.7 Da    PI: 4.7775
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-103043441055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_015901602.1 304 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 344
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-14293359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12299353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.04E-12303348No hitNo description
PfamPF000104.9E-8304344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MESMGVQGEW TSLSGIYTAE EVDFMAQLLN NFSVPNEQDG DSSIGSLQTA SWPGHELTMD  60
MASGNNEGSN CTLEITNSNL YSFSSQGSTN SDKYNSTNGS SILFPTDKML VTNNNCSTAT  120
TSIDFCMGLG DLQYTNSHLI RSGTDHYCLN QLGIRDGNME EDSGNSNKPE PVIPQHNLQV  180
EKKSDMTESE HLMEVKVTTP STKRSRTSSE NVQSDKAKTK SKKSKKLVST SKNIEEESLN  240
GDQNGQSLSS CSSADDSNAS QDLSGSGGVT SSTLSLNESV PLNSTGKTRA RRGSATDPQS  300
LYARKRRERI NERLKILQNL VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDLWMYAP  360
IAYNGKDIGL DLKLTLAKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901602.10.0transcription factor bHLH84-like
TrEMBLA0A3N7FV151e-98A0A3N7FV15_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09210.11e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-56bHLH family protein