PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901676.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 217aa    MW: 25294.4 Da    PI: 7.3919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-16550348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd ll+++++q+G g W++++   g++R++k+c++rw++yl
   XP_015901676.1  5 AWTEEEDNLLKKCIRQYGEGKWHRVPLLAGLKRCRKSCRLRWLNYL 50
                     6*******************************************97 PP
2Myb_DNA-binding49.87.9e-1656100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++ eE +l+++++++lG++ W++Ia +++ gRt++++k++w+ +
   XP_015901676.1  56 RGQFSHEEVDLIIKLHRLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100
                      899*******************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.848150IPR017930Myb domain
SMARTSM007177.1E-13252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-20557IPR009057Homeodomain-like
PfamPF002491.0E-14550IPR001005SANT/Myb domain
SuperFamilySSF466898.8E-27597IPR009057Homeodomain-like
CDDcd001676.69E-11550No hitNo description
PROSITE profilePS5129425.32351105IPR017930Myb domain
SMARTSM007171.1E-1455103IPR001005SANT/Myb domain
PfamPF002493.1E-145698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2458106IPR009057Homeodomain-like
CDDcd001675.51E-1059101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGGIAWTEEE DNLLKKCIRQ YGEGKWHRVP LLAGLKRCRK SCRLRWLNYL RPNIKRGQFS  60
HEEVDLIIKL HRLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKKLNAQET EQNNKNDGNM  120
VNVTRPQPRN IEKSCSRRPC FKPPEDAGST STPVPCIEQS QIYLEDNGYH TWNEEYGAVG  180
GFSTNIQFEQ VREEDETNGK WDLDDFILDL DLWNDSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-21610710110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901676.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901676.11e-162transcription factor MYB113-like
SwissprotQ9FNV91e-54MY113_ARATH; Transcription factor MYB113
TrEMBLA0A061F2613e-82A0A061F261_THECC; Myb domain protein 113, putative
STRINGEOY107525e-83(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]