PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901853.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21567.6 Da    PI: 8.7312
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.12.6e-192874349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +e + +r+vtfskR++gi+ KA ELSvL++ae+av+ fs +gk + +
  XP_015901853.1 28 VEAHNKRHVTFSKRKHGIFNKAAELSVLTGAEIAVMAFSRHGKAFAF 74
                    678899************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-271877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.4931878IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-231988IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-162040IPR002100Transcription factor, MADS-box
PfamPF003191.6E-182974IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-164055IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-165576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MASMNSGSMP ENEKKTSKGR QKIEIKMVEA HNKRHVTFSK RKHGIFNKAA ELSVLTGAEI  60
AVMAFSRHGK AFAFGSPGFE AVVQKYLGQG CTADNHDYSL SSSVTCHASK VQYLAAMKLL  120
EVETRCGDQK MSKQKSKEVE EAASSCSGNG NNGGFWWDCP IESMDLEELK QWLVSLQELK  180
DMVEKKAAGQ IITKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A7e-20191189PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B7e-20191189PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901853.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901213.11e-145agamous-like MADS-box protein AGL61
RefseqXP_015901853.11e-145agamous-like MADS-box protein AGL61
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-23AGAMOUS-like 62