PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901979.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 594aa    MW: 66801 Da    PI: 6.7452
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.12.7e-29129214187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_015901979.1 129 RWPRQETLTLLEIRSRLDFKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 214
                     8*************************************999*****************************98..55667*******85 PP
2trihelix61.91.5e-19430502271
        trihelix   2 WtkqevlaLiearremeerlrrg...klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                     W++ e+  Li++r  me+r+++g   + ++ lWe++++km++ g+ers+ +Ck+kwen+n++ +k+++ ++  
  XP_015901979.1 430 WPELEISRLIQLRAGMESRFQQGggfSDEAVLWEDIANKMARMGYERSALMCKDKWENINNYTRKTAAAKEFS 502
                     *********************9755579************************************998765433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.11126189IPR001005SANT/Myb domain
PROSITE profilePS500906.98128187IPR017877Myb-like domain
PfamPF138376.7E-20129215No hitNo description
CDDcd122032.46E-19129194No hitNo description
PROSITE profilePS500906.272422489IPR017877Myb-like domain
SMARTSM007170.11426491IPR001005SANT/Myb domain
CDDcd122031.87E-23428495No hitNo description
PfamPF138374.2E-13429500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MEMEDQYGMA DLRRLMNGGR PHFPAIPQGG GGAADLFSGH RGLGAGQPPP QPYEMMMIGR  60
QVPEILPRGL NPPPPPPHHH HHHHDFRSAD SAATSTASIT VTATSGPSFS GGLEAETAGC  120
LGGDGGTGRW PRQETLTLLE IRSRLDFKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR  180
EKFENLYKYY KKTKEGKAGR QDGKHYRFFR QLEALYGETS NAVSVPETHF VGTSGGLRFH  240
TTTNNTNPAH QPNQEASYQL HKPCDSLSLS NSSEFDTTSS DDNDLMDNDS SEKRNRKRRG  300
GGKNWKTKIK DFIDWQMRKL MEKQEAWLEK LMGTLEQKEK ERSLREEEWR KEEAARIDRE  360
HKFWAKERAW IEARDSALME ALHKLTGKEI RVPSPEADQG GLMSDQLQDD QNHDDGSEML  420
SKTPKDDETW PELEISRLIQ LRAGMESRFQ QGGGFSDEAV LWEDIANKMA RMGYERSALM  480
CKDKWENINN YTRKTAAAKE FSKKRKENSR SSCGGGYFPN NESASSSLYN HGGGGGGSYC  540
EMNEQGHANN DGSSPSHPNL SNAVHDSCFP FLMSEGENLW DNYGLKLSKG GQNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024923498.10.0trihelix transcription factor PTL
TrEMBLA0A2I4DZV10.0A0A2I4DZV1_JUGRE; trihelix transcription factor PTL
STRINGGLYMA19G37660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-124Trihelix family protein