PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015902192.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

ERF

Protein Properties

Length: 223aa MW: 24976.9 Da PI: 9.8065

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015902192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.1	2.5e-19	91	141	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp++ng +r +lg++ +ae+Aa a+++a+ k++g XP_015902192.1 91 HFRGVRRRP-WGKYAAEIRDPKKNG--ARLWLGTYESAEDAALAYDRAAFKMRG 141 69*****.*******9998..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	7.5E-32	90	150	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-39	91	155	IPR001471	AP2/ERF domain
CDD	cd00018	5.22E-31	91	151	No hit	No description
PROSITE profile	PS51032	23.578	91	149	IPR001471	AP2/ERF domain
Pfam	PF00847	2.2E-13	91	141	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-23	91	150	IPR016177	DNA-binding domain
PRINTS	PR00367	3.7E-13	92	103	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-13	131	151	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSLQLQIMSQ SDLALLDSIR RHLLDDDFNT STLPFDPSPP PPPPPPTPQL LTFTNHHSHP 60 LLLQGSADTA GTVSHLEPEH RDSETRTQVR HFRGVRRRPW GKYAAEIRDP KKNGARLWLG 120 TYESAEDAAL AYDRAAFKMR GSKAKLNFPH LIGSSDSEPD RVAKKRGSPE PSLLFSSSVS 180 EDGSVRSKRR RNNNKVGSTT DSELEHAHWL DVFQVNKLTF GSH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	7e-32	90	156	4	70	ATERF1
3gcc_A	7e-32	90	156	4	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015902192.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015902192.1	1e-163	ethylene-responsive transcription factor ERF098-like
Swissprot	Q40479	9e-43	ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBL	A0A314UW56	2e-64	A0A314UW56_PRUYE; Ethylene-responsive transcription factor 13-like
STRING	EMJ05270	3e-63	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF512	33	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	2e-31	ethylene-responsive element binding factor 13

Publications ? help Back to Top
Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells. Plant Cell Physiol., 2006. 47(4): p. 554-8 [PMID:16452120]