PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902193.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 191aa    MW: 20824.4 Da    PI: 10.2825
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-194192256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g+++AeIrdp+ ng   r++lg++  ae+Aa a+++a+ k++g+
  XP_015902193.1 41 QYRGVRRRP-WGKYAAEIRDPKRNG--SRIWLGTYENAEDAALAYDRAAFKMRGA 92
                    59*******.**********98776..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.674199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-3241100IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2341100IPR016177DNA-binding domain
CDDcd000185.24E-2841101No hitNo description
SMARTSM003808.3E-3741105IPR001471AP2/ERF domain
PfamPF008471.2E-124291IPR001471AP2/ERF domain
PRINTSPR003671.3E-134253IPR001471AP2/ERF domain
PRINTSPR003671.3E-1381101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAVEMGPTAG PTVGPTVVTV TETDVVPPDQ SNNNKPRRGW QYRGVRRRPW GKYAAEIRDP  60
KRNGSRIWLG TYENAEDAAL AYDRAAFKMR GAKAKLNFPH LIGSGAPEPV RVSPKRRSPD  120
ASSSSYSWDS GSPKHKRREL VGSRAAKAES STVCSSVEVF QMAPLTPGDQ GLNDYNVGLS  180
SPPGFFMCGW L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3038105269ATERF1
3gcc_A1e-3038105269ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902193.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902193.11e-139ethylene-responsive transcription factor 2-like
SwissprotQ404791e-47ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A314ZC264e-51A0A314ZC26_PRUYE; Ethylene-responsive transcription factor 1
STRINGXP_008232470.13e-50(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-24ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]