PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015902348.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 482aa MW: 53257.4 Da PI: 7.313

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015902348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl XP_015902348.1 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.174	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.18E-16	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-24	148	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MYHHQQHQVK NIQGSSRMGM PPERHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKSLHGQANI GAAGKIGTVA 120 VAADRISEAT GPHLNNLSIG PQSNKGLHLS EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ 180 GKYLQSVLEK AQETLGRQNL GTVGLEAAKV QLSELVSKVS TQCLNSAFAE LKELQGVCPQ 240 QQTLLQTTQP PDCSMDSCLT CDGSTQKDQE FHNTTSGMVP QLRPSNNDQI NHINAEDHHL 300 MLQKSGTHDQ LPKWCHDHED PKETNMLIGK DIIADQRRSR MLFPVERSSS TTATGLSISI 360 HGGEKTAGSG GSNNGYCDIG RMKGRDTTED DNFLERISSS SSSGRVAVDQ LLHHHHHNNH 420 HQQQIKDHHH EQGVSHHQGY RSSLPNYFAA AAAAKLDLNA HDHENDSSSS CKQFDLNGFS 480 WN

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MYHHQQHQVK NIQGSSRMGM PPERHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKSLHGQANI GAAGKIGTVA  120
VAADRISEAT GPHLNNLSIG PQSNKGLHLS EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQSVLEK AQETLGRQNL GTVGLEAAKV QLSELVSKVS TQCLNSAFAE LKELQGVCPQ  240
QQTLLQTTQP PDCSMDSCLT CDGSTQKDQE FHNTTSGMVP QLRPSNNDQI NHINAEDHHL  300
MLQKSGTHDQ LPKWCHDHED PKETNMLIGK DIIADQRRSR MLFPVERSSS TTATGLSISI  360
HGGEKTAGSG GSNNGYCDIG RMKGRDTTED DNFLERISSS SSSGRVAVDQ LLHHHHHNNH  420
HQQQIKDHHH EQGVSHHQGY RSSLPNYFAA AAAAKLDLNA HDHENDSSSS CKQFDLNGFS  480
WN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015902348.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015902348.1	0.0	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-129	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2I4FMC5	1e-180	A0A2I4FMC5_JUGRE; myb-related protein 2-like
STRING	EOY11198	1e-177	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-124	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]