PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902519.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 114aa    MW: 13036 Da    PI: 5.1929
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902519.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-133878445
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     W ++E  ll+++++++G ++W+ +a+++g +++  qc+++++
   XP_015902519.1 38 WNADEGSLLLEGIEMYGFRNWSEVAEHVG-TKSKAQCINHYN 78
                     *****************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-133280IPR009057Homeodomain-like
PROSITE profilePS5129318.0733385IPR017884SANT domain
SMARTSM007171.7E-93483IPR001005SANT/Myb domain
PfamPF002491.2E-123778IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-103881IPR009057Homeodomain-like
CDDcd001674.33E-123878No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MEHEKFFFTE IKQGKEIANP KGLFPIDNLA YPLICPDWNA DEGSLLLEGI EMYGFRNWSE  60
VAEHVGTKSK AQCINHYNAT ICMNSPFFPL LDLSHVMKKS REELLAMAKE LKEG
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902519.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900772.11e-44transcriptional adapter ADA2-like isoform X1
RefseqXP_024923007.11e-44transcriptional adapter ADA2-like isoform X1
SwissprotQ75LL61e-36TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A061E8N52e-40A0A061E8N5_THECC; Transcriptional adapter
TrEMBLA0A061E9Q02e-40A0A061E9Q0_THECC; Transcriptional adapter
TrEMBLA0A061EGE02e-40A0A061EGE0_THECC; Transcriptional adapter
TrEMBLA0A2P5W4922e-40A0A2P5W492_GOSBA; Uncharacterized protein
STRINGXP_008347821.12e-42(Malus domestica)
STRINGcassava4.1_004777m5e-40(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15371726
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]