PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902520.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 247aa    MW: 26811.1 Da    PI: 8.9892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-204896355
             AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  XP_015902520.1 48 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRG 96
                    8*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.41E-1847104No hitNo description
SMARTSM003806.2E-3747110IPR001471AP2/ERF domain
PROSITE profilePS5103223.27547104IPR001471AP2/ERF domain
PfamPF008479.2E-134796IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-2248105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-3148104IPR001471AP2/ERF domain
PRINTSPR003673.2E-104859IPR001471AP2/ERF domain
PRINTSPR003673.2E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRRGGRGGGG GGGVGGRATD PASSRLRIEN KPIVGPDSNK SPLQEIRFRG VRKRPWGRFA  60
AEIRDPWKKT RVWLGTFDSA EDAARAYDAA ARSLRGPKAK TNFPLPANPH SGLTHIPLYH  120
QHEFHDDRVS SKIDVIQASR PTSSSLSSTV ESFSGPRVST REQPVRPVVV PRLTRRASNP  180
VPPDDDCHSD CDSSSSVVDD AAADCVLTSS SVQRILPFDL NLPPPMMMMD GPDFFGDDDL  240
KATALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-21471131481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311GGRGGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870833.11e-180ethylene-responsive transcription factor 3-like
RefseqXP_015902520.11e-180ethylene-responsive transcription factor 3-like
SwissprotQ9SXS83e-43ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV083e-63A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGXP_008456400.13e-59(Cucumis melo)
STRINGXP_004143195.13e-59(Cucumis sativus)
STRINGXP_004172004.13e-59(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.15e-26ethylene responsive element binding factor 3