PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902583.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TALE
Protein Properties Length: 333aa    MW: 37117.6 Da    PI: 6.8518
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.7e-101091461954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +e+  LA+++gLt++qV +WF N R +
  XP_015902583.1 109 FEHflHPYPKDSEKLMLARQTGLTKNQVANWFINARVR 146
                     665559******************************88 PP
2BELL58.22e-191433072
            BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                    +q+v+s F+ vag g+a+pYt lAl++iS hFrcL+dai++qi
  XP_015902583.1  1 MQIVVSFFDNVAGPGAAEPYTVLALRTISCHFRCLRDAISGQI 43
                    9*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.8E-15140IPR006563POX domain
PROSITE profilePS5007112.43887150IPR001356Homeobox domain
SMARTSM003892.9E-990154IPR001356Homeobox domain
CDDcd000864.09E-1290151No hitNo description
SuperFamilySSF466891.54E-1791157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-2893156IPR009057Homeodomain-like
PfamPF059204.3E-17107146IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MQIVVSFFDN VAGPGAAEPY TVLALRTISC HFRCLRDAIS GQIQVIQKSL GEQGTPANGQ  60
GGAIPRLRYV DQQLRQQKAV QQLGIMRNAW RPQRGLPESS VSILRAWLFE HFLHPYPKDS  120
EKLMLARQTG LTKNQVANWF INARVRLWKP MVEEMYKEEF TDAELNSKLL AENALNEARE  180
SQRTGTNIDM DQVQDRKAEL SGPTGRIAVQ NGSFHEGNTR DSGMPKLQGD HSQKNLYNMD  240
ETFRISQNGD RNLMANPATY DVSELGNFAV GNQVSLSLEL RHCESDGFST SGGSHVRGND  300
AAAATASLDY HCVDAGQQQC RFSNPHLLHD FVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-1696154563Homeobox protein Meis2
3k2a_B2e-1696154563Homeobox protein Meis2
4xrs_A2e-1696153158Homeobox protein Meis1
4xrs_B2e-1696153158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902583.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884961.10.0BEL1-like homeodomain protein 7
RefseqXP_015884962.10.0BEL1-like homeodomain protein 7
RefseqXP_015884964.10.0BEL1-like homeodomain protein 7
RefseqXP_015884965.10.0BEL1-like homeodomain protein 7
RefseqXP_015902583.10.0BEL1-like homeodomain protein 7
RefseqXP_024930331.10.0BEL1-like homeodomain protein 7
TrEMBLA0A2N9IHG61e-142A0A2N9IHG6_FAGSY; Uncharacterized protein
STRINGGLYMA06G03200.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.13e-83BEL1-like homeodomain 7