PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902670.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 336aa    MW: 38708.9 Da    PI: 9.7285
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902670.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.2e-12311131098
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++ rl lp +f++++++  e s   tl+  sg s + k+  +++ +++++++GW++F k+n L   +f+ ++++g+++f   v++f+
  XP_015902670.1  31 KKSNERLLLPSEFLKHISN--ELSDRATLKACSGCSRTAKV--SNTWKGIYIEDGWQQFLKDNSLGKDEFLRISYEGNMCF--SVQIFE 113
                     467889********77753..47789***************..99999*********************************..998885 PP
2B349.29.5e-16247329996
                     HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +v  + ++++p +f +eh     +++++++l++++g+ W v+l     +gr+ + +GW +F ++n+L+ gD ++F+l+gr+e   +v+ 
  XP_015902670.1 247 SVQGRYQVYIPSSFSKEHlPF--KKTVEVVLRNQKGELWVVTL--VVARGRHSICRGWLHFMNDNKLELGDRCIFELVGRKEM--KVHS 329
                     56667789**********633..36789***************..88999999************************997554..5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-1819117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-1619117IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-922112No hitNo description
PROSITE profilePS508638.9822115IPR003340B3 DNA binding domain
SMARTSM010192.6E-424115IPR003340B3 DNA binding domain
PfamPF023622.5E-1030113IPR003340B3 DNA binding domain
PROSITE patternPS003540157168IPR000637HMG-I/HMG-Y, DNA-binding, conserved site
Gene3DG3DSA:2.40.330.106.4E-21236331IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-21237331IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.155239333IPR003340B3 DNA binding domain
SMARTSM010191.1E-9243334IPR003340B3 DNA binding domain
PfamPF023623.7E-14247330IPR003340B3 DNA binding domain
CDDcd100172.14E-17247331No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MERRKMENGN KEKEILEEDN RPSFCTIVFS KKSNERLLLP SEFLKHISNE LSDRATLKAC  60
SGCSRTAKVS NTWKGIYIED GWQQFLKDNS LGKDEFLRIS YEGNMCFSVQ IFEMNGCERM  120
NVRRTRTDHQ SPPTSSKRPQ DSTNVPHFKT HQNSASTTVK RPRGRPRKYP LPTANHHLSK  180
SCEDDSGKSL ISCQSNKPNG FIDGKGKEIK TEEADDHRVH DLSKEDMAID WKAAESFKSK  240
YPYFTCSVQG RYQVYIPSSF SKEHLPFKKT VEVVLRNQKG ELWVVTLVVA RGRHSICRGW  300
LHFMNDNKLE LGDRCIFELV GRKEMKVHSI RTGPGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167KRPRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902670.10.0B3 domain-containing protein At5g18090-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-22VERDANDI